STRINGSTRING
ptsN ptsN SVI_3763 SVI_3763 SVI_0615 SVI_0615 kpsD kpsD gluP-1 gluP-1 SVI_1466 SVI_1466 gluP-2 gluP-2 SVI_1557 SVI_1557 gluP-3 gluP-3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ptsNNitrogen regulatory IIA protein. (147 aa)
SVI_3763LamB porin family protein. (434 aa)
SVI_0615Conserved hypothetical protein. (348 aa)
kpsDPolysialic acid transport protein KpsD. (553 aa)
gluP-1Glucose/galactose transporter. (434 aa)
SVI_1466Polysaccharide biosynthesis protein. (919 aa)
gluP-2Glucose/galactose transporter. (428 aa)
SVI_1557Polysaccharide export protein, putative. (370 aa)
gluP-3Glucose/galactose transporter. (421 aa)
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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