STRINGSTRING
tonB1 tonB1 SVI_0648 SVI_0648 SVI_1179 SVI_1179 SVI_1320 SVI_1320 SVI_1397 SVI_1397 SVI_1963 SVI_1963 SVI_2209 SVI_2209 viuA viuA SVI_2685 SVI_2685 tonB2 tonB2 SVI_3060 SVI_3060 SVI_3211 SVI_3211 SVI_3474 SVI_3474 SVI_3570 SVI_3570 SVI_3608 SVI_3608 SVI_3609 SVI_3609 SVI_4210 SVI_4210 SVI_4282 SVI_4282 SVI_4331 SVI_4331
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tonB1TonB1 protein. (240 aa)
SVI_0648TonB-dependent receptor. (700 aa)
SVI_1179TonB-dependent receptor. (820 aa)
SVI_1320TonB-dependent receptor. (777 aa)
SVI_1397TonB-dependent siderophore receptor. (710 aa)
SVI_1963TonB-dependent siderophore receptor. (706 aa)
SVI_2209TonB-dependent receptor. (715 aa)
viuAFerric vibriobactin receptor. (688 aa)
SVI_2685TonB-dependent receptor. (724 aa)
tonB2TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (206 aa)
SVI_3060TonB-dependent receptor. (727 aa)
SVI_3211TonB-dependent siderophore receptor. (704 aa)
SVI_3474TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (424 aa)
SVI_3570TonB-dependent siderophore receptor. (713 aa)
SVI_3608Hypothetical protein. (498 aa)
SVI_3609Hypothetical protein. (229 aa)
SVI_4210TonB-dependent receptor. (717 aa)
SVI_4282Outer membrane iron(III) dicitrate receptor, putative. (708 aa)
SVI_4331TonB-dependent siderophore receptor. (738 aa)
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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