STRINGSTRING
SVI_0322 SVI_0322 SVI_0343 SVI_0343 ktrB ktrB SVI_0376 SVI_0376 mgtE mgtE SVI_0534 SVI_0534 SVI_0648 SVI_0648 SVI_0780 SVI_0780 SVI_0862 SVI_0862 SVI_0893 SVI_0893 nhaA nhaA SVI_0990 SVI_0990 SVI_1067 SVI_1067 SVI_1137 SVI_1137 SVI_1179 SVI_1179 SVI_1252 SVI_1252 kefC kefC SVI_1291 SVI_1291 SVI_1302 SVI_1302 SVI_1304 SVI_1304 SVI_1305 SVI_1305 SVI_1320 SVI_1320 SVI_1397 SVI_1397 SVI_1522 SVI_1522 SVI_1600 SVI_1600 SVI_1627 SVI_1627 SVI_1666 SVI_1666 SVI_1689 SVI_1689 SVI_1693 SVI_1693 corA corA SVI_1963 SVI_1963 bfr1 bfr1 bfr2 bfr2 SVI_2209 SVI_2209 SVI_2266 SVI_2266 SVI_2278 SVI_2278 SVI_2344 SVI_2344 SVI_2382 SVI_2382 nhaB nhaB viuA viuA SVI_2664 SVI_2664 SVI_2685 SVI_2685 SVI_2815 SVI_2815 putP putP tonB2 tonB2 SVI_2970 SVI_2970 feoB feoB SVI_3025 SVI_3025 SVI_3060 SVI_3060 SVI_3084 SVI_3084 oadB oadB oadA oadA oadG oadG SVI_3211 SVI_3211 SVI_3233 SVI_3233 nqrF nqrF nqrE nqrE nqrD nqrD nqrC nqrC nqrB nqrB nqrA nqrA SVI_3437 SVI_3437 SVI_3444 SVI_3444 SVI_3504 SVI_3504 SVI_3505 SVI_3505 SVI_3506 SVI_3506 SVI_3507 SVI_3507 SVI_3558 SVI_3558 tonB1 tonB1 SVI_3570 SVI_3570 SVI_3605 SVI_3605 SVI_3608 SVI_3608 SVI_3609 SVI_3609 SVI_3640 SVI_3640 SVI_3658 SVI_3658 SVI_3681 SVI_3681 SVI_3708 SVI_3708 SVI_3711 SVI_3711 SVI_3824 SVI_3824 ccmF ccmF ccmA ccmA ccmB ccmB ccmC ccmC ccmD ccmD SVI_4210 SVI_4210 ftn ftn gltS gltS SVI_4241 SVI_4241 SVI_4282 SVI_4282 natA natA SVI_4318 SVI_4318 SVI_4331 SVI_4331 trkH-1 trkH-1 trkH-2 trkH-2 trkA trkA SVI_0330 SVI_0330
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SVI_0322Sodium:alanine symporter family protein. (456 aa)
SVI_0343Adhesion protein, putative; Belongs to the bacterial solute-binding protein 9 family. (288 aa)
ktrBPotassium uptake protein KtrB. (455 aa)
SVI_0376Potassium uptake protein KtrA, putative. (236 aa)
mgtEMagnesium transporter; Acts as a magnesium transporter. (453 aa)
SVI_0534Voltage-gated potassium channel family. (268 aa)
SVI_0648TonB-dependent receptor. (700 aa)
SVI_0780iron(III) ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (342 aa)
SVI_0862Conserved hypothetical protein. (160 aa)
SVI_0893Na+/H+ antiporter, putative. (415 aa)
nhaANa+/H+ antiporter NhaA; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family. (393 aa)
SVI_0990Sodium:alanine symporter family protein. (480 aa)
SVI_1067Na+/H+ antiporter, putative. (682 aa)
SVI_1137Conserved hypothetical protein. (96 aa)
SVI_1179TonB-dependent receptor. (820 aa)
SVI_1252Glutathione-regulated potassium-efflux system protein KefB, putative; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (649 aa)
kefCGlutathione-regulated potassium-efflux system protein KefC; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (640 aa)
SVI_1291NAD(P)H dehydrogenase (quinone), putative. (210 aa)
SVI_1302Hypothetical protein. (92 aa)
SVI_1304Hypothetical protein. (77 aa)
SVI_1305Hypothetical protein. (62 aa)
SVI_1320TonB-dependent receptor. (777 aa)
SVI_1397TonB-dependent siderophore receptor. (710 aa)
SVI_1522Sodium:galactoside symporter family protein. (515 aa)
SVI_1600TonB-dependent receptor. (887 aa)
SVI_1627TonB-dependent receptor. (926 aa)
SVI_1666Conserved hypothetical protein. (291 aa)
SVI_1689Sodium/solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (572 aa)
SVI_1693CBS domain protein. (620 aa)
corAMagnesium and cobalt transport protein CorA; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family. (315 aa)
SVI_1963TonB-dependent siderophore receptor. (706 aa)
bfr1Bacterioferritin subunit 1; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (160 aa)
bfr2Bacterioferritin subunit 2; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (156 aa)
SVI_2209TonB-dependent receptor. (715 aa)
SVI_2266Conserved hypothetical protein. (99 aa)
SVI_2278TonB-dependent receptor. (944 aa)
SVI_2344TonB-dependent receptor. (863 aa)
SVI_2382Sodium/hydrogen exchanger family protein; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (629 aa)
nhaBNa+/H+ antiporter NhaB; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaB Na(+)/H(+) (TC 2.A.34) antiporter family. (527 aa)
viuAFerric vibriobactin receptor. (688 aa)
SVI_2664TonB-dependent heme/hemoglobin receptor. (719 aa)
SVI_2685TonB-dependent receptor. (724 aa)
SVI_2815TonB-dependent heme receptor. (730 aa)
putPSodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (432 aa)
tonB2TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (206 aa)
SVI_2970TonB-dependent receptor. (973 aa)
feoBFerrous iron transport protein B; Probable transporter of a GTP-driven Fe(2+) uptake system. Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. FeoB GTPase (TC 9.A.8) family. (763 aa)
SVI_3025Iron transport protein, periplasmic-binding protein; Belongs to the bacterial solute-binding protein 9 family. (297 aa)
SVI_3060TonB-dependent receptor. (727 aa)
SVI_3084TonB-dependent receptor. (953 aa)
oadBOxaloacetate decarboxylase, beta subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the GcdB/MmdB/OadB family. (376 aa)
oadAOxaloacetate decarboxylase, alpha subunit. (596 aa)
oadGOxaloacetate decarboxylase, gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation. (81 aa)
SVI_3211TonB-dependent siderophore receptor. (704 aa)
SVI_3233Hypothetical protein. (204 aa)
nqrFNADH:ubiquinone oxidoreductase, Na(+)-translocating, beta subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. The first step is catalyzed by NqrF, which accepts electrons from NADH and reduces ubiquinone-1 to ubisemiquinone by a one-electron transfer pathway. (409 aa)
nqrENADH:ubiquinone oxidoreductase, Na(+)-translocating, hydrophobic membrane protein NqrE; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family. (202 aa)
nqrDNADH:ubiquinone oxidoreductase, Na(+)-translocating, hydrophobic membrane protein NqrD; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol; Belongs to the NqrDE/RnfAE family. (210 aa)
nqrCNADH:ubiquinone oxidoreductase, Na(+)-translocating, gamma subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. (264 aa)
nqrBNADH:ubiquinone oxidoreductase, Na(+)-translocating, hydrophobic membrane protein NqrB; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. (399 aa)
nqrANADH:ubiquinone oxidoreductase, Na(+)-translocating, alpha subunit; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. (444 aa)
SVI_3437TonB-dependent receptor. (850 aa)
SVI_3444Conserved hypothetical protein. (393 aa)
SVI_3504Hypothetical protein. (36 aa)
SVI_3505Hypothetical protein. (36 aa)
SVI_3506Hypothetical protein. (36 aa)
SVI_3507Conserved hypothetical protein. (224 aa)
SVI_3558TonB-dependent heme/hemoglobin receptor. (672 aa)
tonB1TonB1 protein. (240 aa)
SVI_3570TonB-dependent siderophore receptor. (713 aa)
SVI_3605Sodium:alanine symporter family protein. (448 aa)
SVI_3608Hypothetical protein. (498 aa)
SVI_3609Hypothetical protein. (229 aa)
SVI_3640Sodium/hydrogen exchanger family protein; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (401 aa)
SVI_3658Conserved hypothetical protein. (191 aa)
SVI_3681acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl transferase subunit alpha/carboxyl transferase subunit beta/biotin carboxylase. (1518 aa)
SVI_3708Glutathione-regulated potassium-efflux system protein KefC, putative; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. (541 aa)
SVI_3711Sodium/solute symporter family protein; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (474 aa)
SVI_3824TonB-dependent receptor. (901 aa)
ccmFCytochrome c-type biogenesis protein CcmF. (659 aa)
ccmAHeme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (215 aa)
ccmBHeme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. (228 aa)
ccmCHeme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. (248 aa)
ccmDHeme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. (66 aa)
SVI_4210TonB-dependent receptor. (717 aa)
ftnFerritin; Iron-storage protein. (179 aa)
gltSSodium/glutamate symporter; Catalyzes the sodium-dependent transport of glutamate. Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family. (407 aa)
SVI_4241Molybdenum ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (368 aa)
SVI_4282Outer membrane iron(III) dicitrate receptor, putative. (708 aa)
natAATP-binding transport protein NatA. (244 aa)
SVI_4318TonB-dependent receptor. (899 aa)
SVI_4331TonB-dependent siderophore receptor. (738 aa)
trkH-1Potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (485 aa)
trkH-2Potassium uptake protein TrkH; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (480 aa)
trkAPotassium uptake protein TrkA. (469 aa)
SVI_0330Conserved hypothetical protein. (174 aa)
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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