STRINGSTRING
SVI_0267 SVI_0267 SVI_0354 SVI_0354 SVI_1315 SVI_1315 SVI_1329 SVI_1329 SVI_2901 SVI_2901 SVI_3227 SVI_3227 SVI_3547 SVI_3547
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SVI_0267Sensory box protein. (1486 aa)
SVI_0354Sensory box histidine kinase/response regulator. (1235 aa)
SVI_1315Sensory box/GGDEF family protein. (335 aa)
SVI_1329Sensory box histidine kinase/response regulator. (1486 aa)
SVI_2901Sensory box protein. (1438 aa)
SVI_3227Sensory box protein. (1018 aa)
SVI_3547Sigma-54 dependent transcriptional regulator/sensory box protein. (489 aa)
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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