STRINGSTRING
SVI_3438 SVI_3438 arcA arcA SVI_3750 SVI_3750 SVI_3907 SVI_3907 cheV-4 cheV-4 pgtA pgtA ntrC ntrC SVI_4239 SVI_4239 SVI_4317 SVI_4317 SVI_0407 SVI_0407 SVI_0502 SVI_0502 SVI_0670 SVI_0670 SVI_0761 SVI_0761 SVI_0808 SVI_0808 SVI_0850 SVI_0850 SVI_0979 SVI_0979 SVI_0982 SVI_0982 phoB phoB SVI_1175 SVI_1175 SVI_1329 SVI_1329 SVI_1330 SVI_1330 SVI_1331 SVI_1331 cheV-1 cheV-1 flrC flrC cheY-2 cheY-2 cheB-2 cheB-2 SVI_1462 SVI_1462 SVI_1512 SVI_1512 SVI_1515 SVI_1515 luxO luxO cheV-2 cheV-2 SVI_0354 SVI_0354 SVI_1650 SVI_1650 phoP phoP SVI_1800 SVI_1800 SVI_1803 SVI_1803 SVI_1838 SVI_1838 SVI_1867 SVI_1867 SVI_2054 SVI_2054 SVI_2173 SVI_2173 SVI_2262 SVI_2262 SVI_2263 SVI_2263 SVI_0348 SVI_0348 SVI_0327 SVI_0327 cpxR cpxR cheY-1 cheY-1 cheB-1 cheB-1 ompR ompR torR torR torS torS SVI_3181 SVI_3181 SVI_2852 SVI_2852 cheV-3 cheV-3 SVI_2280 SVI_2280
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SVI_3438Response regulator. (236 aa)
arcAAerobic respiration control protein ArcA. (239 aa)
SVI_3750DNA-binding response regulator. (182 aa)
SVI_3907Response regulator, OmpR/PhoB family. (246 aa)
cheV-4Chemotaxis protein CheV. (329 aa)
pgtAPhosphoglycerate transport system transcriptional regulatory protein PgtA. (422 aa)
ntrCNitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (469 aa)
SVI_4239DNA-binding response regulator. (225 aa)
SVI_4317Response regulator, AlgR/AgrA/LytR family. (249 aa)
SVI_0407DNA-binding response regulator. (235 aa)
SVI_0502DNA-binding response regulator. (224 aa)
SVI_0670Sigma-54 dependent nitrogen response regulator. (518 aa)
SVI_0761DNA-binding nitrate/nitrite response regulator. (209 aa)
SVI_0808Transcriptional regulatory protein RstA, putative. (237 aa)
SVI_0850Response regulator/EAL domain protein. (460 aa)
SVI_0979Sensory box histidine kinase/response regulator. (678 aa)
SVI_0982Response regulator receiver domain protein. (365 aa)
phoBPhosphate regulon response regulator PhoB. (229 aa)
SVI_1175DNA-binding response regulator. (237 aa)
SVI_1329Sensory box histidine kinase/response regulator. (1486 aa)
SVI_1330Response regulator. (306 aa)
SVI_1331Response regulator receiver domain protein. (388 aa)
cheV-1Chemotaxis protein CheV. (306 aa)
flrCFlagellar regulatory protein C. (453 aa)
cheY-2Chemotaxis protein CheY. (127 aa)
cheB-2Chemotaxis response regulator protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (373 aa)
SVI_1462Response regulator. (367 aa)
SVI_1512Sigma factor sigB regulation protein rsbU, putative. (440 aa)
SVI_1515Sensory box histidine kinase/response regulator. (1214 aa)
luxOLuxO repressor protein. (519 aa)
cheV-2Chemotaxis protein CheV. (300 aa)
SVI_0354Sensory box histidine kinase/response regulator. (1235 aa)
SVI_1650Response regulator. (413 aa)
phoPTranscriptional regulatory protein PhoP. (224 aa)
SVI_1800Sensor histidine kinase/response regulator. (564 aa)
SVI_1803DNA-binding response regulator, LuxR family. (219 aa)
SVI_1838DNA-binding response regulator. (230 aa)
SVI_1867DNA-binding response regulator, LuxR family. (214 aa)
SVI_2054Hypothetical protein. (60 aa)
SVI_2173Response regulator. (530 aa)
SVI_2262Sensor histidine kinase/response regulator. (933 aa)
SVI_2263Transcriptional regulator, LuxR family. (214 aa)
SVI_0348Response regulator. (331 aa)
SVI_0327Chemotaxis protein CheY/response regulator receiver domain protein. (265 aa)
cpxRTranscriptional regulatory protein CpxR. (227 aa)
cheY-1Chemotaxis protein CheY. (120 aa)
cheB-1Chemotaxis response regulator protein-glutamate methylesterase CheB; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (346 aa)
ompRTranscriptional regulatory protein OmpR. (241 aa)
torRtorCAD operon transcriptional regulatory protein TorR. (244 aa)
torSSensor histidine kinase/response regulator TorS. (1019 aa)
SVI_3181Sensor histidine kinase/response regulator. (931 aa)
SVI_2852Response regulator receiver domain protein. (133 aa)
cheV-3Chemotaxis protein CheV. (313 aa)
SVI_2280Sigma-54 dependent DNA-binding response regulator. (476 aa)
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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