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SVI_3727 SVI_3727 ftn ftn tufA-2 tufA-2 secE secE rpoB rpoB rpoC rpoC tufA-1 tufA-1 secY secY rpoA rpoA rpoZ rpoZ secA secA SVI_3917 SVI_3917 SVI_3861 SVI_3861 trxA trxA SVI_3701 SVI_3701 SVI_3693 SVI_3693 SVI_3692 SVI_3692 SVI_3680 SVI_3680 SVI_3679 SVI_3679 SVI_3669 SVI_3669 SVI_3613 SVI_3613 SVI_3610 SVI_3610 asnC asnC ahpC ahpC SVI_3555 SVI_3555 SVI_3482 SVI_3482 SVI_3418 SVI_3418 SVI_3417 SVI_3417 SVI_3355 SVI_3355 adhC adhC fklB fklB secD-2 secD-2 secF-2 secF-2 secG secG SVI_3218 SVI_3218 ribD ribD SVI_3119 SVI_3119 sapA sapA SVI_2971 SVI_2971 fkpA-2 fkpA-2 SVI_2778 SVI_2778 msbA msbA SVI_2743 SVI_2743 sucB sucB SVI_2592 SVI_2592 SVI_2560 SVI_2560 trxB trxB lrp lrp SVI_2284 SVI_2284 bfr2 bfr2 bfr1 bfr1 SVI_2091 SVI_2091 emrD emrD SVI_2044 SVI_2044 msrA msrA SVI_2007 SVI_2007 SVI_2006 SVI_2006 SVI_2005 SVI_2005 bcp-2 bcp-2 sodB sodB SVI_1873 SVI_1873 SVI_1871 SVI_1871 SVI_1853 SVI_1853 SVI_1794 SVI_1794 SVI_1782 SVI_1782 ndk ndk secF-1 secF-1 secD-1 secD-1 SVI_1543 SVI_1543 SVI_1540 SVI_1540 SVI_1539 SVI_1539 fkbP-2 fkbP-2 SVI_1293 SVI_1293 SVI_1181 SVI_1181 SVI_1152 SVI_1152 SVI_1149 SVI_1149 SVI_1109 SVI_1109 SVI_1108 SVI_1108 SVI_1106 SVI_1106 SVI_0950 SVI_0950 SVI_0859 SVI_0859 SVI_0858 SVI_0858 SVI_0852 SVI_0852 fkpA-1 fkpA-1 SVI_0736 SVI_0736 SVI_0591 SVI_0591 bcp-1 bcp-1 SVI_0559 SVI_0559 SVI_0545 SVI_0545 SVI_0424 SVI_0424 SVI_0321 SVI_0321 aceF aceF SVI_0221 SVI_0221
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SVI_3727Transporter, putative. (455 aa)
ftnFerritin; Iron-storage protein. (179 aa)
tufA-2Translation elongation factor Tu. (394 aa)
secEPreprotein translocase, SecE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family. (123 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1343 aa)
rpoCDNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1408 aa)
tufA-1Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (394 aa)
secYPreprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (446 aa)
rpoADNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (329 aa)
rpoZDNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (94 aa)
secAPreprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. (905 aa)
SVI_3917Hypothetical protein. (165 aa)
SVI_3861Transcriptional regulator, AsnC family. (160 aa)
trxAThioredoxin 1; Belongs to the thioredoxin family. (108 aa)
SVI_3701Outer membrane porin, putative. (346 aa)
SVI_3693Conserved hypothetical protein. (142 aa)
SVI_3692Hypothetical protein. (376 aa)
SVI_3680Hypothetical protein. (450 aa)
SVI_3679Conserved hypothetical protein. (141 aa)
SVI_3669Globin-like protein. (137 aa)
SVI_3613Outer membrane porin, putative. (402 aa)
SVI_3610Conserved hypothetical protein. (395 aa)
asnCRegulatory protein AsnC. (153 aa)
ahpCAlkyl hydroperoxide reductase, C subunit; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. (204 aa)
SVI_3555ABC transporter, ATP-binding/permease protein, putative. (629 aa)
SVI_3482Drug resistance transporter, Bcr/CflA family protein. (431 aa)
SVI_3418Hypothetical protein. (188 aa)
SVI_3417Hypothetical protein. (80 aa)
SVI_3355ampG protein, putative. (439 aa)
adhCAlcohol dehydrogenase class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (376 aa)
fklBPeptidyl-prolyl cis-trans isomerase FklB. (205 aa)
secD-2Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (604 aa)
secF-2Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (315 aa)
secGPreprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (111 aa)
SVI_3218Drug resistance transporter, Bcr/CflA family protein. (396 aa)
ribDRiboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (379 aa)
SVI_3119Serine/threonine protein kinase, putative. (460 aa)
sapAPeptide ABC transporter, periplasmic peptide-binding protein. (546 aa)
SVI_2971Outer membrane porin, putative. (401 aa)
fkpA-2FKBP-type peptidyl-prolyl cis-trans isomerase FkpA. (263 aa)
SVI_2778Conserved hypothetical protein. (281 aa)
msbAlipidA export ATP-binding/permease protein msbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (607 aa)
SVI_2743Hypothetical protein. (297 aa)
sucB2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (396 aa)
SVI_2592Bicyclomycin resistance protein. (412 aa)
SVI_2560Phosphotyrosine protein phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (158 aa)
trxBThioredoxin reductase. (317 aa)
lrpLeucine-responsive regulatory protein. (168 aa)
SVI_2284Drug resistance transporter, Bcr/CflA family protein. (418 aa)
bfr2Bacterioferritin subunit 2; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (156 aa)
bfr1Bacterioferritin subunit 1; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. (160 aa)
SVI_2091Transporter, putative. (433 aa)
emrDMultidrug resistance protein D. (426 aa)
SVI_2044Alpha keto acid dehydrogenase complex, E2 component. (535 aa)
msrAPeptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (159 aa)
SVI_2007Conserved hypothetical protein. (152 aa)
SVI_2006Hypothetical protein. (156 aa)
SVI_2005Conserved hypothetical protein. (438 aa)
bcp-2Bacterioferritin comigratory protein. (156 aa)
sodBSuperoxide dismutase, Fe; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (193 aa)
SVI_1873Transmembrane efflux protein. (525 aa)
SVI_1871Transmembrane efflux protein. (543 aa)
SVI_1853Conserved hypothetical protein. (682 aa)
SVI_1794Conserved hypothetical protein. (380 aa)
SVI_1782Antioxidant, AhpC/TSA family. (227 aa)
ndkNucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family. (143 aa)
secF-1Protein-export membrane protein SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (315 aa)
secD-1Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (616 aa)
SVI_1543ABC transporter, ATP-binding/permease protein, putative. (609 aa)
SVI_1540Multidrug transporter, putative. (427 aa)
SVI_1539Multidrug resistance protein, putative. (411 aa)
fkbP-2Peptidyl-prolyl cis-trans isomerase FkbP. (113 aa)
SVI_1293Globin-like protein. (117 aa)
SVI_1181Carboxymuconolactone decarboxylase family protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (144 aa)
SVI_1152Phosphate-binding protein. (323 aa)
SVI_1149Outer membrane porin, putative. (319 aa)
SVI_1109Hypothetical protein. (157 aa)
SVI_1108Hypothetical protein. (405 aa)
SVI_1106Hypothetical protein. (145 aa)
SVI_0950Transmembrane efflux protein. (547 aa)
SVI_0859Surface protein, putative. (1669 aa)
SVI_0858Peptidyl-prolyl cis-trans isomerase, FKBP-type. (156 aa)
SVI_0852Drug transport transmembrane protein, putative. (402 aa)
fkpA-1FKBP-type peptidyl-prolyl cis-trans isomerase FkpA. (262 aa)
SVI_0736Hypothetical protein. (343 aa)
SVI_0591Conserved hypothetical protein. (461 aa)
bcp-1Bacterioferritin comigratory protein. (156 aa)
SVI_0559Hypothetical protein. (515 aa)
SVI_0545Hypothetical protein. (251 aa)
SVI_0424Mce-related protein. (154 aa)
SVI_0321Transporter, putative. (419 aa)
aceFPyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (623 aa)
SVI_0221Transcriptional regulator, AsnC family. (146 aa)
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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