(38 nodes) Innate Immune System network (Shewanella violacea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	SVI_1149	Outer membrane porin, putative. (319 aa)
	SVI_0591	Conserved hypothetical protein. (461 aa)
	fkpA-1	FKBP-type peptidyl-prolyl cis-trans isomerase FkpA. (262 aa)
	SVI_0858	Peptidyl-prolyl cis-trans isomerase, FKBP-type. (156 aa)
	pgi	Glucose-6-phosphate isomerase; Belongs to the GPI family. (545 aa)
	SVI_1025	Conserved hypothetical protein. (378 aa)
	SVI_1335	Conserved hypothetical protein. (128 aa)
	flgL	Flagellar hook-associated protein FlgL. (404 aa)
	SVI_1422	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (482 aa)
	SVI_1423	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (481 aa)
	fkbP-2	Peptidyl-prolyl cis-trans isomerase FkbP. (113 aa)
	SVI_1794	Conserved hypothetical protein. (380 aa)
	SVI_1853	Conserved hypothetical protein. (682 aa)
	SVI_1986	Flagellin, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (232 aa)
	pgm	Phosphoglucomutase, alpha-D-glucose phosphate-specific. (554 aa)
	SVI_2286	Membrane protein, putative; Belongs to the BI1 family. (220 aa)
	serS	seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (428 aa)
	SVI_2442	Patatin-like phospholipase family. (339 aa)
	cdd	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis. (296 aa)
	SVI_2681	Conserved hypothetical protein. (203 aa)
	apt	Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. (181 aa)
	fkpA-2	FKBP-type peptidyl-prolyl cis-trans isomerase FkpA. (263 aa)
	sbcD	Exonuclease SbcD, putative; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (381 aa)
	SVI_2971	Outer membrane porin, putative. (401 aa)
	SVI_3207	Psychrophilic phosphatase I. (371 aa)
	deoC	Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 2 subfamily. (257 aa)
	fklB	Peptidyl-prolyl cis-trans isomerase FklB. (205 aa)
	SVI_3351	Conserved hypothetical protein. (358 aa)
	SVI_3398	Conserved hypothetical protein. (855 aa)
	SVI_3610	Conserved hypothetical protein. (395 aa)
	SVI_3613	Outer membrane porin, putative. (402 aa)
	katB	Catalase; Belongs to the catalase family. (488 aa)
	SVI_3680	Hypothetical protein. (450 aa)
	SVI_3692	Hypothetical protein. (376 aa)
	SVI_3701	Outer membrane porin, putative. (346 aa)
	lacZ	Beta-galactosidase. (1031 aa)
	hemB	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family. (338 aa)
	SVI_4262	Conserved hypothetical protein. (717 aa)

Your Current Organism:

Shewanella violacea

NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SVI_0858	fkbP-2	SVI_0858	SVI_1537	Peptidyl-prolyl cis-trans isomerase, FKBP-type.	Peptidyl-prolyl cis-trans isomerase FkbP.	0.603
SVI_1149	SVI_3613	SVI_1149	SVI_3613	Outer membrane porin, putative.	Outer membrane porin, putative.	0.427
SVI_1422	SVI_1423	SVI_1422	SVI_1423	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.936
SVI_1422	SVI_1986	SVI_1422	SVI_1986	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellin, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.928
SVI_1422	flgL	SVI_1422	SVI_1421	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-associated protein FlgL.	0.960
SVI_1423	SVI_1422	SVI_1423	SVI_1422	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.936
SVI_1423	SVI_1986	SVI_1423	SVI_1986	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellin, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.928
SVI_1423	flgL	SVI_1423	SVI_1421	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-associated protein FlgL.	0.943
SVI_1853	SVI_2681	SVI_1853	SVI_2681	Conserved hypothetical protein.	Conserved hypothetical protein.	0.417
SVI_1986	SVI_1422	SVI_1986	SVI_1422	Flagellin, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.928
SVI_1986	SVI_1423	SVI_1986	SVI_1423	Flagellin, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	0.928
SVI_1986	flgL	SVI_1986	SVI_1421	Flagellin, putative; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.	Flagellar hook-associated protein FlgL.	0.626
SVI_2681	SVI_1853	SVI_2681	SVI_1853	Conserved hypothetical protein.	Conserved hypothetical protein.	0.417
SVI_2971	SVI_3701	SVI_2971	SVI_3701	Outer membrane porin, putative.	Outer membrane porin, putative.	0.512
SVI_3398	pgm	SVI_3398	SVI_2038	Conserved hypothetical protein.	Phosphoglucomutase, alpha-D-glucose phosphate-specific.	0.599
SVI_3613	SVI_1149	SVI_3613	SVI_1149	Outer membrane porin, putative.	Outer membrane porin, putative.	0.427
SVI_3613	SVI_3701	SVI_3613	SVI_3701	Outer membrane porin, putative.	Outer membrane porin, putative.	0.506
SVI_3701	SVI_2971	SVI_3701	SVI_2971	Outer membrane porin, putative.	Outer membrane porin, putative.	0.512
SVI_3701	SVI_3613	SVI_3701	SVI_3613	Outer membrane porin, putative.	Outer membrane porin, putative.	0.506
SVI_4262	pgm	SVI_4262	SVI_2038	Conserved hypothetical protein.	Phosphoglucomutase, alpha-D-glucose phosphate-specific.	0.599

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