STRINGSTRING
SVI_0258 SVI_0258 mshB mshB mshA-1 mshA-1 mshA-2 mshA-2 mshA-3 mshA-3 mshD mshD mshO mshO SVI_0453 SVI_0453 SVI_0805 SVI_0805 SVI_1006 SVI_1006 SVI_1007 SVI_1007 pilE pilE SVI_1012 SVI_1012 SVI_1013 SVI_1013 SVI_1877 SVI_1877 SVI_3543 SVI_3543 gspJ gspJ gspI gspI gspH gspH gspG gspG
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
SVI_0258Pilin, putative. (148 aa)
mshBMSHA pilin protein MshB. (210 aa)
mshA-1MSHA pilin protein MshA. (171 aa)
mshA-2MSHA pilin protein MshA. (166 aa)
mshA-3MSHA pilin protein MshA. (174 aa)
mshDMSHA pilin protein MshD. (191 aa)
mshOMSHA biogenesis protein MshO. (273 aa)
SVI_0453Pilin, putative. (194 aa)
SVI_0805Pilin, putative. (189 aa)
SVI_1006Conserved hypothetical protein. (197 aa)
SVI_1007Conserved hypothetical protein. (327 aa)
pilEType IV pilus biogenesis protein PilE. (135 aa)
SVI_1012Type IV pilus biogenesis protein, putative. (168 aa)
SVI_1013Type IV pilus biogenesis protein, putative. (169 aa)
SVI_1877Conserved hypothetical protein. (219 aa)
SVI_3543Pilin, putative. (192 aa)
gspJGeneral secretion pathway protein J. (257 aa)
gspIGeneral secretion pathway protein I. (129 aa)
gspHGeneral secretion pathway protein H. (198 aa)
gspGGeneral secretion pathway protein G. (144 aa)
Your Current Organism:
Shewanella violacea
NCBI taxonomy Id: 637905
Other names: S. violacea DSS12, Shewanella violacea DSS12, Shewanella violacea JCM 10179, Shewanella violacea str. DSS12, Shewanella violacea strain DSS12
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