STRINGSTRING
ROD_01901 ROD_01901 ROD_01911 ROD_01911 ROD_01921 ROD_01921 ROD_03181 ROD_03181 lafZ lafZ ROD_03201 ROD_03201 ROD_06431 ROD_06431 ROD_06441 ROD_06441 ROD_06451 ROD_06451 ROD_06471 ROD_06471 ROD_06821 ROD_06821 ROD_06831 ROD_06831 ROD_06841 ROD_06841 fsaA fsaA ROD_08301 ROD_08301 ROD_10351 ROD_10351 ROD_10361 ROD_10361 ROD_10371 ROD_10371 ROD_10391 ROD_10391 ROD_12861 ROD_12861 ROD_12871 ROD_12871 ROD_12881 ROD_12881 ROD_26411 ROD_26411 ROD_26421 ROD_26421 ROD_26441 ROD_26441 ROD_26451 ROD_26451 ROD_26461 ROD_26461 ROD_26481 ROD_26481 ROD_28301 ROD_28301 ROD_28311 ROD_28311 ROD_28321 ROD_28321 espN2-1 espN2-1 ROD_31882 ROD_31882 ROD_31891 ROD_31891 ROD_35271 ROD_35271 ROD_35301 ROD_35301 ROD_35311 ROD_35311 ROD_35321 ROD_35321 ROD_36231 ROD_36231 ROD_36241 ROD_36241 ROD_36251 ROD_36251 ROD_40691 ROD_40691 ROD_40701 ROD_40701 ROD_40711 ROD_40711 ROD_45801 ROD_45801 ROD_45811 ROD_45811 ROD_45821 ROD_45821 ROD_47731 ROD_47731 ROD_47741 ROD_47741 ROD_47751 ROD_47751 ROD_47761 ROD_47761
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ROD_01901Putative polysaccharide degrading enzyme (pseudogene); 30 bp terminal inverted repeat of ISCro1, contains 12 mismatches. (225 aa)
ROD_01911ISCro1 transposase B. (115 aa)
ROD_01921ISCro1 transposase C. (523 aa)
ROD_03181Putative exported protein. (157 aa)
lafZLateral flagellar transmembrane regulator. (325 aa)
ROD_03201Putative exported protein. (47 aa)
ROD_06431ISCro6 transposase (pseudogene); 30 bp terminal inverted repeat of ISCro1, contains 12 mismatches. (523 aa)
ROD_06441ISCro1 transposase B. (115 aa)
ROD_06451ISCro1 transposase A. (225 aa)
ROD_06471LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (345 aa)
ROD_06821ISCro1 transposase C. (523 aa)
ROD_06831ISCro1 transposase B. (115 aa)
ROD_06841ISCro1 transposase A. (225 aa)
fsaAFructose-6-phosphate aldolase; Catalyzes the reversible formation of fructose 6-phosphate from dihydroxyacetone and D-glyceraldehyde 3-phosphate via an aldolization reaction; Belongs to the transaldolase family. Type 3A subfamily. (220 aa)
ROD_08301Conserved hypothetical protein. (314 aa)
ROD_10351Putative phage integrase (pseudogene); 30 bp terminal inverted repeat of ISCro1, contains 12 mismatches. (523 aa)
ROD_10361ISCro1 transposase B. (115 aa)
ROD_10371ISCro1 transposase A. (225 aa)
ROD_10391Hypothetical prophage protein. (168 aa)
ROD_12861Putative transport protein (pseudogene); 30 bp terminal inverted repeat of ISCro1, contains 12 mismatches. (523 aa)
ROD_12871ISCro1 transposase B. (115 aa)
ROD_12881ISCro1 transposase A. (225 aa)
ROD_26411ISCro1 transposase C. (523 aa)
ROD_26421ISCro1 transposase B. (115 aa)
ROD_26441ISCro1 transposase A. (225 aa)
ROD_26451ISCro1 transposase A. (225 aa)
ROD_26461ISCro1 transposase B. (115 aa)
ROD_26481ISCro1 transposase C. (523 aa)
ROD_28301Putative Rhs protein (fragment); 30 bp terminal inverted repeat of ISCro1, contains 12 mismatches. (225 aa)
ROD_28311ISCro1 transposase B. (115 aa)
ROD_28321ISCro1 transposase C. (523 aa)
espN2-1Putative transposase (pseudogene); 30 bp terminal inverted repeat of ISCro1, contains 12 mismatches. (225 aa)
ROD_31882ISCro1 transposase B. (115 aa)
ROD_31891ISCro1 transposase C. (523 aa)
ROD_35271Hypothetical protein. (71 aa)
ROD_35301Conserved hypothetical protein (pseudogene); 30 bp terminal inverted repeat of ISCro1, contains 12 mismatches. (225 aa)
ROD_35311ISCro1 transposase B. (115 aa)
ROD_35321ISCro1 transposase C. (523 aa)
ROD_36231IS200 family transposase (fragment); 30 bp terminal inverted repeat of ISCro1, contains 12 mismatches. (225 aa)
ROD_36241ISCro1 transposase B. (115 aa)
ROD_36251ISCro1 transposase C. (523 aa)
ROD_40691Rhs protein (pseudogene); 30 bp terminal inverted repeat of ISCro1, contains 12 mismatches. (225 aa)
ROD_40701ISCro1 transposase B. (115 aa)
ROD_40711ISCro1 transposase C. (523 aa)
ROD_45801Rhs protein (pseudogene); 30 bp terminal inverted repeat of ISCro1, contains 12 mismatches. (523 aa)
ROD_45811ISCro1 transposase B. (115 aa)
ROD_45821ISCro1 transposase A. (225 aa)
ROD_47731Conserved hypothetical protein (fragment); 30 bp terminal inverted repeat of ISCro1, contains 12 mismatches. (523 aa)
ROD_47741ISCro1 transposase B. (115 aa)
ROD_47751ISCro1 transposase A. (225 aa)
ROD_47761Hypothetical protein. (52 aa)
Your Current Organism:
Citrobacter rodentium
NCBI taxonomy Id: 637910
Other names: C. rodentium ICC168, Citrobacter rodentium ICC168, Citrobacter rodentium str. ICC168, Citrobacter rodentium strain ICC168
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