STRINGSTRING
Snov_0274 Snov_0274 Snov_1245 Snov_1245 Snov_1569 Snov_1569 Snov_1728 Snov_1728 Snov_2897 Snov_2897 Snov_3241 Snov_3241 Snov_3368 Snov_3368 Snov_3495 Snov_3495 Snov_3651 Snov_3651 Snov_4329 Snov_4329
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0274PFAM: aminotransferase class-III; KEGG: mno:Mnod_5513 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (460 aa)
Snov_1245PFAM: Aldehyde Dehydrogenase; KEGG: xau:Xaut_2714 aldehyde dehydrogenase. (476 aa)
Snov_1569PFAM: aminotransferase class-III; KEGG: bbt:BBta_1928 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (459 aa)
Snov_1728KEGG: azc:AZC_0555 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (254 aa)
Snov_2897KEGG: atc:AGR_L_2660 hypothetical protein; PFAM: Aldehyde Dehydrogenase. (479 aa)
Snov_3241KEGG: azc:AZC_0555 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (253 aa)
Snov_3368TIGRFAM: succinic semialdehyde dehydrogenase; KEGG: mes:Meso_1323 succinate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family. (480 aa)
Snov_3495PFAM: iron-containing alcohol dehydrogenase; KEGG: reu:Reut_C6426 iron-containing alcohol dehydrogenase. (374 aa)
Snov_3651PFAM: Aldehyde Dehydrogenase; KEGG: rpc:RPC_0104 succinate-semialdehyde dehydrogenase (NAD(P)+); Belongs to the aldehyde dehydrogenase family. (502 aa)
Snov_4329KEGG: vei:Veis_4520 succinate-semialdehyde dehydrogenase (NAD(P)(+)); PFAM: Aldehyde Dehydrogenase. (474 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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