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Snov_0643 Snov_0643 Snov_0644 Snov_0644 gatC gatC gatA gatA gatB gatB Snov_1820 Snov_1820 Snov_2437 Snov_2437 Snov_2438 Snov_2438 Snov_2864 Snov_2864 Snov_3604 Snov_3604 Snov_3775 Snov_3775
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0643KEGG: bbt:BBta_0720 hypothetical protein. (64 aa)
Snov_0644Amidohydrolase, AtzE family; KEGG: azc:AZC_1515 amidase; TIGRFAM: amidohydrolase, AtzE family; PFAM: Amidase. (469 aa)
gatCglutamyl-tRNA(Gln) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (95 aa)
gatAglutamyl-tRNA(Gln) amidotransferase, A subunit; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (493 aa)
gatBglutamyl-tRNA(Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (492 aa)
Snov_1820KEGG: rpt:Rpal_1653 hypothetical protein. (130 aa)
Snov_2437PFAM: isochorismatase hydrolase; KEGG: mch:Mchl_2014 isochorismatase hydrolase. (231 aa)
Snov_2438KEGG: bbt:BBta_2756 hypothetical protein. (537 aa)
Snov_2864PFAM: Amidase; KEGG: bph:Bphy_7797 amidase. (480 aa)
Snov_3604Amidase; KEGG: xau:Xaut_4065 amidase; PFAM: Amidase. (476 aa)
Snov_3775KEGG: mpo:Mpop_3899 allophanate hydrolase; TIGRFAM: allophanate hydrolase; PFAM: Amidase. (602 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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