STRINGSTRING
Snov_1396 Snov_1396 Snov_1401 Snov_1401 Snov_1403 Snov_1403 Snov_2887 Snov_2887 metZ metZ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_1396TIGRFAM: cystathionine beta-lyase; KEGG: azc:AZC_1584 cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein. (403 aa)
Snov_1401Rhodanese domain protein; KEGG: azc:AZC_2826 rhodanese-related sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein. (282 aa)
Snov_1403PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: xau:Xaut_4677 pyridoxal-5'-phosphate-dependent protein beta subunit. (343 aa)
Snov_2887PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: nar:Saro_1061 pyridoxal-5'-phosphate-dependent enzyme, beta subunit. (372 aa)
metZO-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. (401 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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