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Snov_0727 Snov_0727 Snov_0728 Snov_0728 ccmE ccmE Snov_0730 Snov_0730 Snov_0731 Snov_0731 Snov_0732 Snov_0732 Snov_0733 Snov_0733 ccmC ccmC Snov_2781 Snov_2781 Snov_3487 Snov_3487 ccmA ccmA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0727PFAM: 17 kDa surface antigen; KEGG: xau:Xaut_3178 LipA a lipoprotein. (155 aa)
Snov_0728TIGRFAM: cytochrome c-type biogenesis protein CcmI; KEGG: azc:AZC_1132 cytochrome c-type biogenesis protein. (374 aa)
ccmECcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. (148 aa)
Snov_0730KEGG: azc:AZC_1134 cytochrome c-type biogenesis protein; TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein. (662 aa)
Snov_0731KEGG: met:M446_6480 hypothetical protein. (83 aa)
Snov_0732PFAM: Protein of unknown function DUF2283; KEGG: mta:Moth_2326 hypothetical protein. (63 aa)
Snov_0733Cytochrome C biogenesis protein; Possible subunit of a heme lyase. (181 aa)
ccmCHeme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. (244 aa)
Snov_2781Periplasmic protein thiol/disulfide oxidoreductase DsbE; KEGG: bra:BRADO0388 periplasmic thioredoxin (cytochrome c biogenesis); TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein. (198 aa)
Snov_3487Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. (223 aa)
ccmAHeme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (211 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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