STRINGSTRING
Snov_1503 Snov_1503 Snov_2487 Snov_2487 Snov_2488 Snov_2488 Snov_2489 Snov_2489 Snov_2490 Snov_2490 Snov_3408 Snov_3408
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_1503PFAM: Domain of unknown function DUF1849; KEGG: azc:AZC_2317 hypothetical protein. (272 aa)
Snov_2487PFAM: ATPase associated with various cellular activities AAA_3; KEGG: xau:Xaut_2948 ATPase. (336 aa)
Snov_2488PFAM: protein of unknown function DUF58; KEGG: xau:Xaut_2947 hypothetical protein. (317 aa)
Snov_2489TIGRFAM: conserved hypothetical protein; KEGG: azc:AZC_3511 double-transmembrane region. (966 aa)
Snov_2490PFAM: protein of unknown function DUF1355; KEGG: xau:Xaut_2945 hypothetical protein. (690 aa)
Snov_3408KEGG: azc:AZC_4606 hypothetical protein. (944 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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