STRINGSTRING
Snov_0552 Snov_0552 Snov_0553 Snov_0553 Snov_0555 Snov_0555 Snov_4208 Snov_4208 Snov_4209 Snov_4209 Snov_4210 Snov_4210
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0552PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: bja:bll2792 putative dehydrogenase, oxidoreductase FAD flavoprotein. (401 aa)
Snov_0553PFAM: alpha/beta hydrolase fold; KEGG: oca:OCAR_6762 non-heme chloroperoxidase. (321 aa)
Snov_0555PFAM: transcriptional regulator domain protein; KEGG: oca:OCAR_6759 transcriptional regulator, CadC-family. (525 aa)
Snov_4208KEGG: sfu:Sfum_1461 hypothetical protein. (303 aa)
Snov_4209KEGG: xau:Xaut_4634 hypothetical protein. (440 aa)
Snov_4210KEGG: rhi:NGR_b13620 putative 3-hydroxyalkanoate synthetase. (737 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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