STRINGSTRING
Snov_0551 Snov_0551 Snov_1422 Snov_1422 Snov_2680 Snov_2680 Snov_2681 Snov_2681 Snov_2683 Snov_2683
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0551KEGG: mdi:METDI4456 beta-lactamase-like. (305 aa)
Snov_1422PFAM: alpha/beta hydrolase fold; KEGG: rle:RL2912 hypothetical protein. (258 aa)
Snov_2680PFAM: Cupin 2 conserved barrel domain protein; KEGG: mno:Mnod_7642 cupin 2 conserved barrel domain protein. (145 aa)
Snov_2681PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: bph:Bphy_5577 NmrA family protein. (254 aa)
Snov_2683PFAM: NmrA family protein; KEGG: bmj:BMULJ_04545 fusion protein of NAD-dependent epimerase/dehydratase and GCN5-related N-acetyltransferase. (255 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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