STRINGSTRING
Snov_0214 Snov_0214 Snov_0215 Snov_0215 Snov_0216 Snov_0216 Snov_0632 Snov_0632 Snov_0635 Snov_0635
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0214KEGG: ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. (266 aa)
Snov_0215PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mno:Mnod_2985 binding-protein-dependent transport systems inner membrane component. (291 aa)
Snov_0216PFAM: NMT1/THI5 like domain protein; KEGG: dsh:Dshi_2543 NMT1/THI5-like domain-containing protein. (358 aa)
Snov_0632PFAM: NMT1/THI5 like domain protein; KEGG: atc:AGR_L_3061 putative thiamine biosynthesis protein. (316 aa)
Snov_0635PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dba:Dbac_0926 binding-protein-dependent transport systems inner membrane component. (250 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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