(14 nodes) Mostly uncharacterized, incl. mRNA binding, and Dihydroxy-acid dehydratase network (Starkeya novella)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Snov_2379	KEGG: azc:AZC_2363 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (305 aa)
	Snov_2380	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2362 ABC transporter permease protein. (269 aa)
	Snov_2381	NMT1/THI5 like domain protein; KEGG: azc:AZC_2361 ABC transporter periplasmic binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3. (341 aa)
	Snov_2382	PFAM: homocysteine S-methyltransferase; KEGG: gsu:GSU1327 homocysteine S-methyltransferase domain-containing protein. (313 aa)
	Snov_2383	KEGG: azc:AZC_4030 hypothetical protein. (94 aa)
	Snov_2384	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: mlo:mlr8433 hypothetical protein. (152 aa)
	Snov_2385	PFAM: LemA family protein; KEGG: azc:AZC_2562 LemA protein. (203 aa)
	Snov_2386	PFAM: protein of unknown function DUF477; KEGG: xau:Xaut_1670 hypothetical protein. (263 aa)
	Snov_2387	PFAM: protein of unknown function DUF477; KEGG: xau:Xaut_1671 hypothetical protein. (209 aa)
	ilvD-2	TIGRFAM: dihydroxy-acid dehydratase; KEGG: mpo:Mpop_2797 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family. (610 aa)
	Snov_2389	PFAM: PhnA protein; KEGG: avi:Avi_5247 alkylphosphonate uptake protein. (100 aa)
	Snov_2390	KEGG: cpi:Cpin_2212 hypothetical protein. (41 aa)
	Snov_2391	KEGG: mno:Mnod_8060 hypothetical protein. (98 aa)
	Snov_2392	PFAM: alpha/beta hydrolase fold; KEGG: mpt:Mpe_A3656 putative hydrolase. (260 aa)

Your Current Organism:

Starkeya novella

NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Snov_2379	Snov_2380	Snov_2379	Snov_2380	KEGG: azc:AZC_2363 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2362 ABC transporter permease protein.	0.963
Snov_2379	Snov_2381	Snov_2379	Snov_2381	KEGG: azc:AZC_2363 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.	NMT1/THI5 like domain protein; KEGG: azc:AZC_2361 ABC transporter periplasmic binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3.	0.949
Snov_2379	Snov_2382	Snov_2379	Snov_2382	KEGG: azc:AZC_2363 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.	PFAM: homocysteine S-methyltransferase; KEGG: gsu:GSU1327 homocysteine S-methyltransferase domain-containing protein.	0.737
Snov_2379	Snov_2383	Snov_2379	Snov_2383	KEGG: azc:AZC_2363 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.	KEGG: azc:AZC_4030 hypothetical protein.	0.514
Snov_2380	Snov_2379	Snov_2380	Snov_2379	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2362 ABC transporter permease protein.	KEGG: azc:AZC_2363 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.	0.963
Snov_2380	Snov_2381	Snov_2380	Snov_2381	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2362 ABC transporter permease protein.	NMT1/THI5 like domain protein; KEGG: azc:AZC_2361 ABC transporter periplasmic binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3.	0.951
Snov_2380	Snov_2382	Snov_2380	Snov_2382	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2362 ABC transporter permease protein.	PFAM: homocysteine S-methyltransferase; KEGG: gsu:GSU1327 homocysteine S-methyltransferase domain-containing protein.	0.737
Snov_2380	Snov_2383	Snov_2380	Snov_2383	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2362 ABC transporter permease protein.	KEGG: azc:AZC_4030 hypothetical protein.	0.514
Snov_2381	Snov_2379	Snov_2381	Snov_2379	NMT1/THI5 like domain protein; KEGG: azc:AZC_2361 ABC transporter periplasmic binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3.	KEGG: azc:AZC_2363 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.	0.949
Snov_2381	Snov_2380	Snov_2381	Snov_2380	NMT1/THI5 like domain protein; KEGG: azc:AZC_2361 ABC transporter periplasmic binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2362 ABC transporter permease protein.	0.951
Snov_2381	Snov_2382	Snov_2381	Snov_2382	NMT1/THI5 like domain protein; KEGG: azc:AZC_2361 ABC transporter periplasmic binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3.	PFAM: homocysteine S-methyltransferase; KEGG: gsu:GSU1327 homocysteine S-methyltransferase domain-containing protein.	0.773
Snov_2381	Snov_2383	Snov_2381	Snov_2383	NMT1/THI5 like domain protein; KEGG: azc:AZC_2361 ABC transporter periplasmic binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3.	KEGG: azc:AZC_4030 hypothetical protein.	0.538
Snov_2381	Snov_2384	Snov_2381	Snov_2384	NMT1/THI5 like domain protein; KEGG: azc:AZC_2361 ABC transporter periplasmic binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3.	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: mlo:mlr8433 hypothetical protein.	0.414
Snov_2382	Snov_2379	Snov_2382	Snov_2379	PFAM: homocysteine S-methyltransferase; KEGG: gsu:GSU1327 homocysteine S-methyltransferase domain-containing protein.	KEGG: azc:AZC_2363 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.	0.737
Snov_2382	Snov_2380	Snov_2382	Snov_2380	PFAM: homocysteine S-methyltransferase; KEGG: gsu:GSU1327 homocysteine S-methyltransferase domain-containing protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2362 ABC transporter permease protein.	0.737
Snov_2382	Snov_2381	Snov_2382	Snov_2381	PFAM: homocysteine S-methyltransferase; KEGG: gsu:GSU1327 homocysteine S-methyltransferase domain-containing protein.	NMT1/THI5 like domain protein; KEGG: azc:AZC_2361 ABC transporter periplasmic binding protein; PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3.	0.773
Snov_2382	Snov_2383	Snov_2382	Snov_2383	PFAM: homocysteine S-methyltransferase; KEGG: gsu:GSU1327 homocysteine S-methyltransferase domain-containing protein.	KEGG: azc:AZC_4030 hypothetical protein.	0.538
Snov_2382	Snov_2384	Snov_2382	Snov_2384	PFAM: homocysteine S-methyltransferase; KEGG: gsu:GSU1327 homocysteine S-methyltransferase domain-containing protein.	PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: mlo:mlr8433 hypothetical protein.	0.430
Snov_2383	Snov_2379	Snov_2383	Snov_2379	KEGG: azc:AZC_4030 hypothetical protein.	KEGG: azc:AZC_2363 ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase.	0.514
Snov_2383	Snov_2380	Snov_2383	Snov_2380	KEGG: azc:AZC_4030 hypothetical protein.	PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: azc:AZC_2362 ABC transporter permease protein.	0.514

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