STRINGSTRING
Snov_0811 Snov_0811 xerC-2 xerC-2 Snov_3413 Snov_3413 Snov_3414 Snov_3414 Snov_3802 Snov_3802 Snov_3803 Snov_3803
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0811Cell division protein FtsK/SpoIIIE; KEGG: azc:AZC_3264 putative DNA segregation ATPase; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; Belongs to the FtsK/SpoIIIE/SftA family. (859 aa)
xerC-2Integrase family protein; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (328 aa)
Snov_3413KEGG: azc:AZC_0096 FtsK protein; PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase. (888 aa)
Snov_3414PFAM: aminotransferase class I and II; KEGG: xau:Xaut_1842 aminotransferase class I and II. (416 aa)
Snov_3802TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KorB domain protein; KEGG: azc:AZC_4712 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family. (305 aa)
Snov_3803PFAM: Cobyrinic acid ac-diamide synthase; KEGG: xau:Xaut_1836 cobyrinic acid ac-diamide synthase. (287 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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