STRINGSTRING
Snov_0111 Snov_0111 Snov_0112 Snov_0112 Snov_0113 Snov_0113 Snov_0114 Snov_0114 Snov_0116 Snov_0116 Snov_0117 Snov_0117 Snov_0118 Snov_0118 Snov_0119 Snov_0119 Snov_0120 Snov_0120 Snov_0121 Snov_0121 Snov_0122 Snov_0122 Snov_0123 Snov_0123 Snov_0124 Snov_0124 Snov_0847 Snov_0847 Snov_1563 Snov_1563 Snov_1564 Snov_1564 Snov_1565 Snov_1565 Snov_1566 Snov_1566 xylA xylA xylB xylB Snov_2542 Snov_2542 Snov_2543 Snov_2543 Snov_2544 Snov_2544 Snov_2545 Snov_2545 Snov_2546 Snov_2546 Snov_2547 Snov_2547 Snov_2548 Snov_2548 Snov_2549 Snov_2549 Snov_2550 Snov_2550 Snov_3556 Snov_3556 Snov_3557 Snov_3557 Snov_3558 Snov_3558 Snov_3559 Snov_3559 Snov_3560 Snov_3560 Snov_3561 Snov_3561 Snov_3669 Snov_3669 Snov_3670 Snov_3670 Snov_3671 Snov_3671
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0111PFAM: inner-membrane translocator; KEGG: bid:Bind_3072 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family. (396 aa)
Snov_0112KEGG: bid:Bind_3073 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (510 aa)
Snov_0113PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bid:Bind_3074 multiple sugar-binding periplasmic receptor ChvE precursor. (356 aa)
Snov_0114PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: bid:Bind_3075 SMP-30/gluconolaconase/LRE domain-containing protein. (309 aa)
Snov_0116Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer. (361 aa)
Snov_0117PFAM: oxidoreductase domain protein; KEGG: bid:Bind_3077 galactose 1-dehydrogenase. (308 aa)
Snov_0118PFAM: dihydrodipicolinate synthetase; KEGG: xau:Xaut_1021 dihydrodipicolinate synthetase; Belongs to the DapA family. (310 aa)
Snov_0119KEGG: xau:Xaut_1022 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family. (586 aa)
Snov_0120GntR domain protein; KEGG: bra:BRADO1811 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH. (240 aa)
Snov_0121PFAM: inner-membrane translocator; KEGG: bbt:BBta_2130 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family. (331 aa)
Snov_0122PFAM: inner-membrane translocator; KEGG: bja:blr3202 sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. (332 aa)
Snov_0123KEGG: bbt:BBta_2128 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (510 aa)
Snov_0124PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:blr3200 ABC transporter sugar-binding protein. (321 aa)
Snov_0847PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bid:Bind_2341 alcohol dehydrogenase. (343 aa)
Snov_1563PFAM: inner-membrane translocator; KEGG: rhi:NGR_b01280 putative ABC transporter, permease subunit; Belongs to the binding-protein-dependent transport system permease family. (338 aa)
Snov_1564PFAM: inner-membrane translocator; KEGG: sit:TM1040_3252 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (341 aa)
Snov_1565ABC transporter related protein; KEGG: rhi:NGR_b01270 ribose import ATP-binding protein RbsA; PFAM: ABC transporter related; SMART: AAA ATPase. (515 aa)
Snov_1566PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sit:TM1040_3254 TMAO reductase system periplasmic protein TorT. (369 aa)
xylATIGRFAM: xylose isomerase; KEGG: bra:BRADO2360 xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family. (439 aa)
xylBXylulokinase; KEGG: bid:Bind_3807 xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like. (485 aa)
Snov_2542KEGG: bbt:BBta_3990 LacI family transcription regulator; PFAM: regulatory protein LacI; SMART: regulatory protein LacI. (345 aa)
Snov_2543KEGG: ara:Arad_3364 D-xylose ABC transporter, substrate-binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator. (346 aa)
Snov_2544PFAM: inner-membrane translocator; KEGG: mes:Meso_3113 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (442 aa)
Snov_2545KEGG: mlo:mll3710 ABC-transport system ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (277 aa)
Snov_2546KEGG: xau:Xaut_0417 hypothetical protein. (130 aa)
Snov_2547PFAM: protein of unknown function DUF461; KEGG: mlo:mll3326 hypothetical protein. (183 aa)
Snov_2548KEGG: bpt:Bpet3195 sulfite reductase. (450 aa)
Snov_2549PFAM: regulatory protein LysR; KEGG: xau:Xaut_3199 ModE family transcriptional regulator. (136 aa)
Snov_2550KEGG: azc:AZC_0219 hypothetical protein. (65 aa)
Snov_3556KEGG: pde:Pden_4771 ABC ribose transporter, periplasmic solute-binding protein. (319 aa)
Snov_3557PFAM: inner-membrane translocator; KEGG: rsq:Rsph17025_2684 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family. (333 aa)
Snov_3558KEGG: pde:Pden_4769 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (503 aa)
Snov_3559PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rsh:Rsph17029_2906 oxidoreductase domain-containing protein. (378 aa)
Snov_3560PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: rhi:NGR_c29470 putative endonuclease. (352 aa)
Snov_3561Transcriptional regulator, LacI family; KEGG: rsq:Rsph17025_2680 alanine racemase; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI. (331 aa)
Snov_3669PFAM: inner-membrane translocator; KEGG: mlo:mll7017 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (327 aa)
Snov_3670Inner-membrane translocator; KEGG: mlo:mll7018 ribose ABC transporter, ATP-binding protein; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family. (845 aa)
Snov_3671KEGG: mlo:mll7019 hypothetical protein. (345 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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