STRINGSTRING
Snov_1563 Snov_1563 Snov_1564 Snov_1564 Snov_1565 Snov_1565 Snov_1566 Snov_1566 Snov_3556 Snov_3556 Snov_3557 Snov_3557 Snov_3558 Snov_3558 Snov_3559 Snov_3559 Snov_3560 Snov_3560 Snov_3561 Snov_3561 Snov_3669 Snov_3669 Snov_3670 Snov_3670 Snov_3671 Snov_3671
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_1563PFAM: inner-membrane translocator; KEGG: rhi:NGR_b01280 putative ABC transporter, permease subunit; Belongs to the binding-protein-dependent transport system permease family. (338 aa)
Snov_1564PFAM: inner-membrane translocator; KEGG: sit:TM1040_3252 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (341 aa)
Snov_1565ABC transporter related protein; KEGG: rhi:NGR_b01270 ribose import ATP-binding protein RbsA; PFAM: ABC transporter related; SMART: AAA ATPase. (515 aa)
Snov_1566PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sit:TM1040_3254 TMAO reductase system periplasmic protein TorT. (369 aa)
Snov_3556KEGG: pde:Pden_4771 ABC ribose transporter, periplasmic solute-binding protein. (319 aa)
Snov_3557PFAM: inner-membrane translocator; KEGG: rsq:Rsph17025_2684 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family. (333 aa)
Snov_3558KEGG: pde:Pden_4769 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (503 aa)
Snov_3559PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rsh:Rsph17029_2906 oxidoreductase domain-containing protein. (378 aa)
Snov_3560PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: rhi:NGR_c29470 putative endonuclease. (352 aa)
Snov_3561Transcriptional regulator, LacI family; KEGG: rsq:Rsph17025_2680 alanine racemase; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI. (331 aa)
Snov_3669PFAM: inner-membrane translocator; KEGG: mlo:mll7017 ribose ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family. (327 aa)
Snov_3670Inner-membrane translocator; KEGG: mlo:mll7018 ribose ABC transporter, ATP-binding protein; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; Belongs to the binding-protein-dependent transport system permease family. (845 aa)
Snov_3671KEGG: mlo:mll7019 hypothetical protein. (345 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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