STRINGSTRING
Snov_1911 Snov_1911 Snov_3256 Snov_3256 Snov_3257 Snov_3257 Snov_3258 Snov_3258 kduI kduI Snov_3260 Snov_3260 Snov_3261 Snov_3261 Snov_4071 Snov_4071 Snov_4072 Snov_4072 Snov_4073 Snov_4073 Snov_4074 Snov_4074 Snov_4289 Snov_4289 Snov_4290 Snov_4290 Snov_4291 Snov_4291 Snov_4292 Snov_4292 uxuA uxuA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_1911PFAM: NAD-dependent epimerase/dehydratase; KEGG: cak:Caul_1797 NAD-dependent epimerase/dehydratase. (269 aa)
Snov_3256PFAM: NAD-dependent epimerase/dehydratase; KEGG: mrd:Mrad2831_3413 NAD-dependent epimerase/dehydratase. (289 aa)
Snov_3257PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: oan:Oant_3342 SMP-30/gluconolaconase/LRE domain-containing protein. (298 aa)
Snov_3258KEGG: rhi:NGR_b17650 2-deoxy-D-gluconate 3-dehydrogenase protein; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR. (254 aa)
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (280 aa)
Snov_3260KEGG: azc:AZC_3339 GntR family transcriptional regulator; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH. (225 aa)
Snov_3261PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: xca:xccb100_0162 hypothetical protein. (263 aa)
Snov_40712-keto-4-pentenoate hydratase-like protein; KEGG: bja:bll5831 putative hydratase. (260 aa)
Snov_4072KEGG: bph:Bphy_4214 GntR domain-containing protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH. (244 aa)
Snov_40732-dehydro-3-deoxygalactonokinase; KEGG: met:M446_4620 2-keto-3-deoxy-galactonokinase; PFAM: 2-keto-3-deoxy-galactonokinase. (317 aa)
Snov_4074PFAM: KDPG and KHG aldolase; KEGG: azc:AZC_4410 2-keto-3-deoxy-6-phosphogluconate aldolase. (208 aa)
Snov_4289PFAM: N-acylglucosamine 2-epimerase; KEGG: smd:Smed_2871 mannose-6-phosphate isomerase. (395 aa)
Snov_4290Galactarate dehydratase; KEGG: azc:AZC_3340 altronate hydrolase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein. (512 aa)
Snov_4291Transcriptional regulator, GntR family; KEGG: azc:AZC_3341 regulatory protein; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH. (263 aa)
Snov_4292PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: azc:AZC_3347 mannitol dehydrogenase. (505 aa)
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate. (404 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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