STRINGSTRING
Snov_1234 Snov_1234 Snov_4134 Snov_4134 Snov_4332 Snov_4332 Snov_4333 Snov_4333 Snov_4334 Snov_4334 Snov_4335 Snov_4335 Snov_4336 Snov_4336 Snov_4337 Snov_4337 Snov_4338 Snov_4338 Snov_4339 Snov_4339 Snov_4340 Snov_4340 Snov_4341 Snov_4341
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_1234PFAM: transposase IS3/IS911 family protein; KEGG: xau:Xaut_1093 transposase IS3/IS911 family protein. (100 aa)
Snov_4134PFAM: transposase IS3/IS911 family protein; KEGG: bra:BRADO5490 putative transposase. (131 aa)
Snov_4332KEGG: rhi:NGR_c25940 putative transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH. (311 aa)
Snov_4333KEGG: rhi:NGR_c25920 homoisocitrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase. (361 aa)
Snov_4334PFAM: Aldehyde Dehydrogenase; KEGG: rhi:NGR_c25860 putative NADP+ dependent succinate-semialdehyde dehydrogenase. (458 aa)
Snov_4335PFAM: Cupin 2 conserved barrel domain protein; KEGG: rhi:NGR_c25840 hypothetical protein. (138 aa)
Snov_4336PFAM: conserved hypothetical protein; KEGG: rhi:NGR_c25910 tricarboxylic transport. (325 aa)
Snov_4337KEGG: rhi:NGR_c25900 hypothetical protein. (163 aa)
Snov_4338PFAM: protein of unknown function DUF112 transmembrane; KEGG: rhi:NGR_c25890 hypothetical protein. (498 aa)
Snov_4339PFAM: Malate/L-lactate dehydrogenase; KEGG: met:M446_3591 malate/L-lactate dehydrogenase; Belongs to the LDH2/MDH2 oxidoreductase family. (356 aa)
Snov_4340PFAM: transposase IS3/IS911 family protein; KEGG: mlo:mll6089 transposase. (88 aa)
Snov_4341PFAM: Integrase catalytic region; KEGG: mlo:mll6088 transposase. (217 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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