STRINGSTRING
Snov_1342 Snov_1342 Snov_2716 Snov_2716 Snov_3697 Snov_3697 trpS trpS Snov_3970 Snov_3970 Snov_3971 Snov_3971
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_1342PFAM: alpha/beta hydrolase fold; KEGG: azc:AZC_3617 hypothetical protein. (221 aa)
Snov_2716KEGG: azc:AZC_0164 lytic murein transglycosylase precursor; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein. (455 aa)
Snov_36974Fe-4S ferredoxin iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (111 aa)
trpStryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (343 aa)
Snov_3970PFAM: virulence factor MVIN family protein; KEGG: xau:Xaut_3084 integral membrane protein MviN. (505 aa)
Snov_3971PFAM: PfkB domain protein; KEGG: azc:AZC_0976 putative cabohydrate kinase. (332 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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