STRINGSTRING
Snov_4108 Snov_4108 Snov_4109 Snov_4109 Snov_4110 Snov_4110 Snov_4296 Snov_4296 Snov_4330 Snov_4330 Snov_4387 Snov_4387 Snov_4386 Snov_4386 Snov_0112 Snov_0112 Snov_0123 Snov_0123 Snov_0124 Snov_0124 Snov_0354 Snov_0354 Snov_0471 Snov_0471 Snov_0506 Snov_0506 Snov_0507 Snov_0507 Snov_0837 Snov_0837 Snov_0845 Snov_0845 Snov_0923 Snov_0923 Snov_1565 Snov_1565 Snov_1751 Snov_1751 Snov_1755 Snov_1755 Snov_1762 Snov_1762 Snov_1900 Snov_1900 Snov_1912 Snov_1912 Snov_1927 Snov_1927 Snov_2238 Snov_2238 Snov_2482 Snov_2482 Snov_2545 Snov_2545 Snov_2724 Snov_2724 Snov_3062 Snov_3062 Snov_3224 Snov_3224 Snov_3362 Snov_3362 Snov_3556 Snov_3556 Snov_3558 Snov_3558 Snov_3671 Snov_3671 Snov_3724 Snov_3724 Snov_4104 Snov_4104 Snov_4105 Snov_4105
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_4108KEGG: rhi:NGR_b04090 putative PTS-dependent dihydroxyacetone kinase,phosphotransferase subunit; TIGRFAM: dihydroxyacetone kinase, phosphotransfer subunit; PFAM: PTS system fructose subfamily IIA component. (137 aa)
Snov_4109KEGG: rlg:Rleg_2435 phosphotransferase system, phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr. (116 aa)
Snov_4110PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: rlg:Rleg_2436 PEP-utilizing protein; Belongs to the PEP-utilizing enzyme family. (520 aa)
Snov_4296KEGG: bmc:BAbS19_II04030 ABC transporter, ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (356 aa)
Snov_4330KEGG: xau:Xaut_0503 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (359 aa)
Snov_4387KEGG: bbt:BBta_7372 PTS system phosphocarrier protein HPr; TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr. (95 aa)
Snov_4386PFAM: PTS system fructose subfamily IIA component; KEGG: azc:AZC_4068 PTS system fructose subfamily IIA component. (133 aa)
Snov_0112KEGG: bid:Bind_3073 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (510 aa)
Snov_0123KEGG: bbt:BBta_2128 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (510 aa)
Snov_0124PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:blr3200 ABC transporter sugar-binding protein. (321 aa)
Snov_0354KEGG: azc:AZC_0344 PTS IIA-like nitrogen-regulatory protein; TIGRFAM: PTS IIA-like nitrogen-regulatory protein PtsN; PTS system, fructose subfamily, IIA subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2. (154 aa)
Snov_0471PFAM: Gluconate transporter; KEGG: tle:Tlet_1725 gluconate transporter. (444 aa)
Snov_0506KEGG: met:M446_1974 ABC transporter related; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase. (369 aa)
Snov_0507KEGG: met:M446_1973 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (365 aa)
Snov_0837KEGG: bja:blr3224 ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (334 aa)
Snov_0845KEGG: smd:Smed_4132 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (362 aa)
Snov_0923KEGG: azc:AZC_1507 ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. (643 aa)
Snov_1565ABC transporter related protein; KEGG: rhi:NGR_b01270 ribose import ATP-binding protein RbsA; PFAM: ABC transporter related; SMART: AAA ATPase. (515 aa)
Snov_1751PFAM: polysaccharide export protein; KEGG: mno:Mnod_7135 polysaccharide export protein. (384 aa)
Snov_1755KEGG: rhi:NGR_b09500 RkpR, polysaccharide export protein. (482 aa)
Snov_1762PFAM: Capsule polysaccharide biosynthesis protein; KEGG: mpo:Mpop_2466 capsule polysaccharide biosynthesis protein. (444 aa)
Snov_1900KEGG: swi:Swit_4845 ABC transporter related; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. (605 aa)
Snov_1912KEGG: sth:STH1782 sugar ABC transportor ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase. (362 aa)
Snov_1927KEGG: azc:AZC_2820 ABC transporter; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase. (599 aa)
Snov_2238PFAM: Soluble ligand binding domain; polysaccharide export protein; KEGG: xau:Xaut_1959 polysaccharide export protein. (283 aa)
Snov_2482ABC transporter related protein; KEGG: pau:PA14_22440 putative ATP-binding/permease fusion ABC transporter; PFAM: ABC transporter related; SMART: AAA ATPase. (619 aa)
Snov_2545KEGG: mlo:mll3710 ABC-transport system ATP binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (277 aa)
Snov_2724PTSINtr with GAF domain, PtsP; TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; GAF domain protein; PEP-utilising protein mobile region; KEGG: xau:Xaut_2624 phosphoenolpyruvate-protein phosphotransferase PtsP; SMART: GAF domain protein; Belongs to the PEP-utilizing enzyme family. (755 aa)
Snov_3062TIGRFAM: lipid A ABC exporter family, fused ATPase and inner membrane subunits; PFAM: ABC transporter related; ABC transporter transmembrane region; KEGG: azc:AZC_0494 ABC transporter; SMART: AAA ATPase. (599 aa)
Snov_3224PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: pzu:PHZ_c1149 polysaccharide export protein. (265 aa)
Snov_3362KEGG: azc:AZC_3764 ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase. (239 aa)
Snov_3556KEGG: pde:Pden_4771 ABC ribose transporter, periplasmic solute-binding protein. (319 aa)
Snov_3558KEGG: pde:Pden_4769 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase. (503 aa)
Snov_3671KEGG: mlo:mll7019 hypothetical protein. (345 aa)
Snov_3724KEGG: rru:Rru_A1260 ABC transporter component; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (377 aa)
Snov_4104ABC transporter related protein; KEGG: rhi:NGR_b04050 predicted MalK, ABC-type sugar transport systems, ATPase component MalK; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (370 aa)
Snov_4105ABC transporter related protein; KEGG: rhi:NGR_b04060 predicted MalK, ABC-type sugar transport systems, ATPase component MalK; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (336 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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