STRINGSTRING
Snov_1782 Snov_1782 Snov_1781 Snov_1781 Snov_1343 Snov_1343 Snov_1314 Snov_1314 Snov_0935 Snov_0935 Snov_0455 Snov_0455 Snov_0414 Snov_0414 Snov_0337 Snov_0337 Snov_0147 Snov_0147 Snov_0091 Snov_0091 Snov_0088 Snov_0088 Snov_4113 Snov_4113 Snov_3756 Snov_3756 Snov_2740 Snov_2740 Snov_2222 Snov_2222 ntrC ntrC
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_1782Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: azc:AZC_3084 nitrogen regulation protein NtrY; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; PAS domain containing protein; histidine kinase A domain protein. (734 aa)
Snov_1781Two component, sigma54 specific, transcriptional regulator, Fis family; KEGG: azc:AZC_3083 nitrogen assimilation regulatory protein NtrX; PFAM: sigma-54 factor interaction domain-containing protein; response regulator receiver; helix-turn-helix Fis-type; SMART: response regulator receiver; AAA ATPase. (455 aa)
Snov_1343KEGG: azc:AZC_3616 putative cysteine desulfurase; PFAM: aminotransferase class V. (389 aa)
Snov_1314Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; histidine kinase A domain protein; KEGG: bja:blr0279 two-component hybrid sensor and regulator; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAC repeat-containing protein; PAS domain containing protein. (753 aa)
Snov_0935Glutamate--putrescine ligase; KEGG: azc:AZC_3648 putative glutamine synthetase protein; PFAM: glutamine synthetase catalytic region. (469 aa)
Snov_0455KEGG: azc:AZC_1499 glutamine synthetase III; TIGRFAM: glutamine synthetase, type III; PFAM: glutamine synthetase catalytic region. (433 aa)
Snov_0414KEGG: met:M446_4572 glutamate--ammonia ligase; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp. (344 aa)
Snov_0337Glutamate--putrescine ligase; KEGG: azc:AZC_4442 glutamine synthetase family protein; PFAM: glutamine synthetase catalytic region. (466 aa)
Snov_0147PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: bms:BR0328 putative lipoprotein. (405 aa)
Snov_0091KEGG: oan:Oant_2634 CRP/FNR family transcriptional regulator; PFAM: regulatory protein Crp; cyclic nucleotide-binding; SMART: regulatory protein Crp; cyclic nucleotide-binding. (213 aa)
Snov_0088PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold domain protein; histidine kinase A domain protein; KEGG: mea:Mex_1p1833 PAS/PAC sensor signal transduction histidine kinase (fragment); SMART: ATP-binding region ATPase domain protein; PAS domain containing protein; histidine kinase A domain protein. (383 aa)
Snov_4113Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A2886 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; PAC repeat-containing protein. (631 aa)
Snov_3756Multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: azc:AZC_1360 sensor protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein. (484 aa)
Snov_2740PFAM: protein of unknown function DUF900 hydrolase family protein; KEGG: xau:Xaut_3189 protein of unknown function DUF900 hydrolase family protein. (416 aa)
Snov_2222KEGG: azc:AZC_1601 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp. (469 aa)
ntrCTwo component, sigma54 specific, transcriptional regulator, Fis family; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (481 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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