STRINGSTRING
Snov_2255 Snov_2255 Snov_2238 Snov_2238 bamA bamA Snov_2040 Snov_2040 Snov_1925 Snov_1925 Snov_4307 Snov_4307 Snov_4077 Snov_4077 Snov_3819 Snov_3819 Snov_1751 Snov_1751 Snov_1718 Snov_1718 Snov_1661 Snov_1661 Snov_1621 Snov_1621 Snov_1615 Snov_1615 Snov_1424 Snov_1424 Snov_1418 Snov_1418 Snov_1168 Snov_1168 Snov_1099 Snov_1099 lptD lptD Snov_1028 Snov_1028 Snov_0829 Snov_0829 bamD bamD Snov_0623 Snov_0623 Snov_0268 Snov_0268 Snov_0110 Snov_0110 Snov_0028 Snov_0028 Snov_3800 Snov_3800 Snov_3641 Snov_3641 Snov_3224 Snov_3224 Snov_3156 Snov_3156 Snov_0727 Snov_0727 pal pal Snov_3005 Snov_3005 Snov_2946 Snov_2946 Snov_2882 Snov_2882 Snov_2829 Snov_2829 Snov_2814 Snov_2814 Snov_2789 Snov_2789 Snov_2670 Snov_2670 Snov_2471 Snov_2471 Snov_2373 Snov_2373 Snov_2359 Snov_2359
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_2255PFAM: MltA-interacting MipA family protein; KEGG: azc:AZC_1663 hypothetical protein. (286 aa)
Snov_2238PFAM: Soluble ligand binding domain; polysaccharide export protein; KEGG: xau:Xaut_1959 polysaccharide export protein. (283 aa)
bamAOuter membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (822 aa)
Snov_2040KEGG: rle:pRL110385 putative transmembrane protein. (152 aa)
Snov_1925KEGG: azc:AZC_2817 type I secretion outer membrane protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein. (469 aa)
Snov_4307KEGG: azc:AZC_0546 outer membrane autotransporter barrel protein; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein. (965 aa)
Snov_4077Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (418 aa)
Snov_3819PFAM: MltA domain protein; 3D domain protein; KEGG: xau:Xaut_2049 MltA domain-containing protein. (416 aa)
Snov_1751PFAM: polysaccharide export protein; KEGG: mno:Mnod_7135 polysaccharide export protein. (384 aa)
Snov_1718PFAM: Lytic transglycosylase catalytic; KEGG: oan:Oant_0077 lytic transglycosylase catalytic. (183 aa)
Snov_1661PFAM: SmpA/OmlA domain protein; KEGG: azc:AZC_2298 SmpA protein. (178 aa)
Snov_1621PFAM: OmpA/MotB domain protein; KEGG: xau:Xaut_3825 OmpA/MotB domain-containing protein. (725 aa)
Snov_1615PFAM: OmpA/MotB domain protein; KEGG: nwi:Nwi_1814 OmpA/MotB. (336 aa)
Snov_1424PFAM: OmpA/MotB domain protein; KEGG: azc:AZC_0780 OmpA family protein. (202 aa)
Snov_1418PFAM: Lytic transglycosylase catalytic; Sporulation domain protein; KEGG: met:M446_4519 lytic transglycosylase catalytic. (331 aa)
Snov_1168KEGG: bmr:BMI_II228 hypothetical protein. (156 aa)
Snov_1099Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane. (429 aa)
lptDOrganic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (826 aa)
Snov_1028PFAM: acid phosphatase (Class B); KEGG: mno:Mnod_3004 acid phosphatase (class B). (235 aa)
Snov_0829PFAM: surface antigen (D15); KEGG: xau:Xaut_4224 surface antigen (D15). (668 aa)
bamDOuter membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (305 aa)
Snov_0623KEGG: mno:Mnod_2780 hypothetical protein. (340 aa)
Snov_0268KEGG: azc:AZC_1198 hypothetical protein. (167 aa)
Snov_0110KEGG: rlg:Rleg_0480 outer membrane autotransporter barrel domain protein; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein. (1167 aa)
Snov_0028KEGG: rsq:Rsph17025_2085 hypothetical protein. (867 aa)
Snov_3800PFAM: Protein of unknown function DUF2159, secreted; KEGG: azc:AZC_0568 hypothetical protein. (208 aa)
Snov_3641KEGG: msl:Msil_3324 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; Secretin/TonB short domain; TonB-dependent receptor. (813 aa)
Snov_3224PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: pzu:PHZ_c1149 polysaccharide export protein. (265 aa)
Snov_3156PFAM: Lytic transglycosylase catalytic; KEGG: oan:Oant_1733 lytic transglycosylase catalytic. (175 aa)
Snov_0727PFAM: 17 kDa surface antigen; KEGG: xau:Xaut_3178 LipA a lipoprotein. (155 aa)
palPeptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (164 aa)
Snov_3005PFAM: porin opacity type; KEGG: oca:OCAR_7162 porin, opacity type. (222 aa)
Snov_2946PFAM: Hep_Hag repeat-containing protein; YadA domain protein; KEGG: bpm:BURPS1710b_2229 Hep_Hag family protein. (481 aa)
Snov_2882PFAM: Lytic transglycosylase catalytic; KEGG: azc:AZC_3829 lytic transglycosylase precursor. (220 aa)
Snov_2829KEGG: azc:AZC_0117 outer membrane autotransporter barrel precursor; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein. (1159 aa)
Snov_2814PFAM: OmpW family protein; KEGG: mlo:mll6127 outer membrane protein. (240 aa)
Snov_2789PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: xau:Xaut_3112 PpiC-type peptidyl-prolyl cis-trans isomerase. (337 aa)
Snov_2670KEGG: azc:AZC_2885 outer membrane autotransporter barrel protein; TIGRFAM: outer membrane autotransporter barrel domain protein; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein. (2166 aa)
Snov_2471KEGG: xau:Xaut_2277 outer membrane autotransporter; TIGRFAM: outer membrane autotransporter barrel domain protein; PFAM: Autotransporter beta- domain protein. (948 aa)
Snov_2373KEGG: mno:Mnod_1078 TonB-dependent receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug. (756 aa)
Snov_2359PFAM: protein of unknown function DUF1022; KEGG: tmz:Tmz1t_3771 protein of unknown function DUF1022. (363 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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