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| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (82 aa) |
| | rplX | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (105 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (185 aa) |
| | rpsN | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rplF | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa) |
| | rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (120 aa) |
| | rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (183 aa) |
| | rpmD | KEGG: mes:Meso_1660 50S ribosomal protein L30; TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30. (69 aa) |
| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (163 aa) |
| | rpsM | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (122 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (129 aa) |
| | rplQ | KEGG: azc:AZC_2529 ribosomal protein L17; TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17. (142 aa) |
| | Snov_1475 | AAA ATPase central domain protein; KEGG: xau:Xaut_4770 recombination factor protein RarA; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase. (437 aa) |
| | clpS | ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. (123 aa) |
| | rpmG | KEGG: oca:OCAR_5778 50S ribosomal protein L33; TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (55 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (879 aa) |
| | Snov_1553 | KEGG: azc:AZC_3564 ethanolamine ammonia-lyase large subunit; PFAM: Ethanolamine ammonia lyase large subunit. (462 aa) |
| | eutC | KEGG: azc:AZC_3565 ethanolamine ammonia-lyase small subunit; PFAM: Ethanolamine ammonia-lyase light chain; Belongs to the EutC family. (271 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (243 aa) |
| | parC | DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (744 aa) |
| | gyrA | DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (918 aa) |
| | pdhA | Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (361 aa) |
| | rpsB | Ribosomal protein S2; KEGG: xau:Xaut_4439 30S ribosomal protein S2; TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. (333 aa) |
| | Snov_1908 | TIGRFAM: carbohydrate kinase, thermoresistant glucokinase family; KEGG: ret:RHE_CH00741 gluconokinase protein; PFAM: shikimate kinase. (173 aa) |
| | rpsD | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (205 aa) |
| | Snov_2212 | PFAM: ATP12 ATPase; KEGG: mno:Mnod_7121 ATP12 ATPase. (256 aa) |
| | rpsI | PFAM: ribosomal protein S9; KEGG: azc:AZC_2191 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (158 aa) |
| | rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (153 aa) |
| | Snov_2289 | PFAM: regulatory protein TetR; KEGG: xau:Xaut_1511 TetR family transcriptional regulator. (218 aa) |
| | Snov_2338 | PFAM: protein of unknown function DUF985; KEGG: met:M446_4703 hypothetical protein. (169 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (645 aa) |
| | Snov_2359 | PFAM: protein of unknown function DUF1022; KEGG: tmz:Tmz1t_3771 protein of unknown function DUF1022. (363 aa) |
| | Snov_2440 | PFAM: protein of unknown function DUF861 cupin_3; KEGG: oan:Oant_2491 protein of unknown function DUF861 cupin_3. (117 aa) |
| | Snov_2465 | PFAM: protein of unknown function DUF185; KEGG: rsh:Rsph17029_0231 hypothetical protein. (369 aa) |
| | rplY | Ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (212 aa) |
| | Snov_2530 | PFAM: aminotransferase class V; KEGG: rme:Rmet_5630 aminotransferase, class V. (401 aa) |
| | Snov_2581 | TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; KEGG: mlo:mll4050 DNA helicase RecQ; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein. (611 aa) |
| | Snov_2728 | PFAM: MOSC domain containing protein; MOSC domain protein beta barrel domain protein; KEGG: mea:Mex_1p2347 MOSC (sulfur-carrier) domain protein. (280 aa) |
| | Snov_2733 | PFAM: protein of unknown function DUF985; KEGG: rpc:RPC_0507 hypothetical protein. (144 aa) |
| | rpmF | KEGG: mno:Mnod_5920 ribosomal protein L32; TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; Belongs to the bacterial ribosomal protein bL32 family. (61 aa) |
| | rplS | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (135 aa) |
| | rimM | 16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (180 aa) |
| | rpsP | KEGG: azc:AZC_3952 30S ribosomal protein S16; TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (119 aa) |
| | Snov_2768 | KEGG: app:CAP2UW1_0667 ATP/cobalamin adenosyltransferase; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (203 aa) |
| | Snov_2809 | PFAM: protein of unknown function DUF55; KEGG: xau:Xaut_1108 hypothetical protein. (139 aa) |
| | rpsU-2 | KEGG: bja:blr0365 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (92 aa) |
| | Snov_2956 | PFAM: protein of unknown function DUF159; KEGG: oan:Oant_1531 hypothetical protein; Belongs to the SOS response-associated peptidase family. (214 aa) |
| | Snov_3045 | PFAM: regulatory protein TetR; KEGG: xau:Xaut_3070 TetR family transcriptional regulator. (210 aa) |
| | rpmE | Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. (74 aa) |
| | rpmJ | TIGRFAM: ribosomal protein L36; KEGG: xau:Xaut_2062 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (41 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (306 aa) |
| | Snov_3124 | PFAM: protein of unknown function DUF29; KEGG: mpo:Mpop_2482 protein of unknown function DUF29. (156 aa) |
| | Snov_3134 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (559 aa) |
| | Snov_3177 | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: hypothetical protein. (188 aa) |
| | Snov_3187 | Phosphoketolase; KEGG: bid:Bind_2204 putative phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase-like; D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase. (790 aa) |
| | Snov_3199 | Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. (300 aa) |
| | Snov_3219 | TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: avn:Avin_30060 trimeric LpxA-like family protein. (214 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (729 aa) |
| | Snov_3372 | PFAM: regulatory protein TetR; KEGG: mfa:Mfla_2564 TetR family transcriptional regulator. (206 aa) |
| | Snov_3384 | KEGG: mpo:Mpop_3212 OHCU decarboxylase; TIGRFAM: OHCU decarboxylase; hydroxyisourate hydrolase; PFAM: Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase; Transthyretin. (301 aa) |
| | Snov_3388 | Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin. (279 aa) |
| | Snov_3429 | PFAM: regulatory protein TetR; KEGG: xau:Xaut_1150 TetR family transcriptional regulator. (248 aa) |
| | nadD | Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (221 aa) |
| | Snov_3451 | ATP/cobalamin adenosyltransferase; KEGG: bmc:BAbS19_I18540 protein of unknown function DUF80; TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (199 aa) |
| | Snov_3456 | KEGG: azc:AZC_4664 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein. (293 aa) |
| | Snov_3595 | KEGG: smd:Smed_4331 hypothetical protein. (230 aa) |
| | Snov_3612 | PFAM: regulatory protein TetR; KEGG: met:M446_5646 TetR family transcriptional regulator. (238 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (102 aa) |
| | rpmA | KEGG: azc:AZC_4093 50S ribosomal protein L27; TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. (89 aa) |
| | Snov_3685 | KEGG: psb:Psyr_1929 hypothetical protein. (414 aa) |
| | rpmB | KEGG: azc:AZC_0547 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (102 aa) |
| | Snov_3707 | PFAM: Tetracycline transcriptional regulator YcdC domain protein; regulatory protein TetR; KEGG: vap:Vapar_4844 transcriptional regulator, TetR family. (239 aa) |
| | Snov_3734 | KEGG: met:M446_4784 hypothetical protein. (133 aa) |
| | Snov_3802 | TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KorB domain protein; KEGG: azc:AZC_4712 ParB-like partition protein; SMART: ParB domain protein nuclease; Belongs to the ParB family. (305 aa) |
| | Snov_3868 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (569 aa) |
| | Snov_3881 | KEGG: azc:AZC_0098 riboflavin kinase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; Belongs to the ribF family. (316 aa) |
| | rpsO | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | ispE | 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (296 aa) |
| | ihfB | Integration host factor, beta subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (97 aa) |
| | rpsU-3 | KEGG: azc:AZC_3628 ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (79 aa) |
| | Snov_4033 | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: azc:AZC_4465 putative transcription regulator protein. (266 aa) |
| | Snov_4124 | KEGG: azc:AZC_2284 topoisomerase IB. (374 aa) |
| | Snov_4166 | PFAM: regulatory protein TetR; KEGG: mlo:mlr1953 transcriptional regulator. (200 aa) |
| | Snov_4234 | KEGG: oca:OCAR_5001 NADPH-dependent f420 reductase; TIGRFAM: NADPH-dependent F420 reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent. (216 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (201 aa) |
| | smc | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1150 aa) |
| | Snov_4451 | TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase-associated domain protein; helicase domain protein; KEGG: azc:AZC_0286 ATP-dependent helicase; SMART: helicase domain protein; DEAD-like helicase. (827 aa) |
| | Snov_4474 | PFAM: regulatory protein TetR; KEGG: mag:amb2971 transcriptional regulator. (202 aa) |
| | Snov_4475 | Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (106 aa) |
| | Snov_0007 | KEGG: rsh:Rsph17029_3297 hypothetical protein. (232 aa) |
| | Snov_0008 | KEGG: mno:Mnod_7350 hypothetical protein. (354 aa) |
| | Snov_0040 | KEGG: rop:ROP_06080 hypothetical protein. (502 aa) |
| | Snov_0044 | PFAM: protein of unknown function DUF159; KEGG: bja:blr6107 hypothetical protein; Belongs to the SOS response-associated peptidase family. (227 aa) |
| | Snov_0069 | KEGG: xau:Xaut_1471 putative mRNA 3-end processing factor. (352 aa) |
| | Snov_0076 | PFAM: DSBA oxidoreductase; KEGG: azc:AZC_0543 2-hydroxychromene-2-carboxylate isomerase. (204 aa) |
| | rpmI | KEGG: mno:Mnod_5554 ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (66 aa) |
| | rplT | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (122 aa) |
| | Snov_0328 | PFAM: protein of unknown function DUF924; KEGG: vap:Vapar_2217 protein of unknown function DUF924. (181 aa) |
| | Snov_0329 | PFAM: regulatory protein TetR; KEGG: mch:Mchl_0328 transcriptional regulator, TetR family. (220 aa) |
| | hpf | Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (197 aa) |
| | Snov_0355 | Hypothetical protein; KEGG: mno:Mnod_7736 transcriptional regulator, XRE family. (107 aa) |
| | rpmH | KEGG: azc:AZC_4055 50S ribosomal protein L34; TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | Snov_0429 | KEGG: bbt:BBta_0452 ribulose 1,5-bisphosphate carboxylase small subunit; PFAM: ribulose bisphosphate carboxylase small chain. (139 aa) |
| | gyrB | DNA gyrase, B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (812 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa) |
| | Snov_0622 | Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. (561 aa) |
| | rpsU | KEGG: bja:blr0365 30S ribosomal protein S21; TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (91 aa) |
| | Snov_0691 | PFAM: regulatory protein TetR; KEGG: bja:blr4006 transcriptional regulatory protein. (194 aa) |
| | Snov_0754 | PFAM: transcriptional coactivator/pterin dehydratase; KEGG: xau:Xaut_4534 transcriptional coactivator/pterin dehydratase. (126 aa) |
| | Snov_0776 | Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: atc:AGR_pAT_650 hypothetical protein. (182 aa) |
| | Snov_0885 | KEGG: avi:Avi_8089 PEP phosphonomutase. (273 aa) |
| | Snov_0964 | PFAM: CBS domain containing protein; KEGG: pis:Pisl_0269 signal transduction protein. (131 aa) |
| | Snov_0995 | KEGG: bcj:BCAL2067 hypothetical protein. (211 aa) |
| | Snov_1078 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (494 aa) |
| | rplI | Ribosomal protein L9; Binds to the 23S rRNA. (189 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (88 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (164 aa) |
| | Snov_1098 | PFAM: DNA polymerase III chi subunit HolC; KEGG: azc:AZC_0540 DNA polymerase III chi subunit. (148 aa) |
| | Snov_1125 | PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: mes:Meso_3070 glutathione-dependent formaldehyde-activating, GFA. (137 aa) |
| | Snov_1133 | TIGRFAM: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family; KEGG: ccs:CCNA_01063 putative UDP-perosamine 4-acetyl transferase. (210 aa) |
| | Snov_1185 | PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: rpe:RPE_4147 beta-lactamase domain-containing protein. (532 aa) |
| | Snov_1223 | PFAM: regulatory protein TetR; KEGG: sme:SMa1887 putative transcriptional regulator. (201 aa) |
| | ubiX | 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (205 aa) |
| | Snov_1295 | PFAM: protein of unknown function DUF159; KEGG: bra:BRADO0486 hypothetical protein; Belongs to the SOS response-associated peptidase family. (246 aa) |
| | Snov_1350 | PFAM: glutathione-dependent formaldehyde-activating GFA; KEGG: pde:Pden_2817 glutathione-dependent formaldehyde-activating, GFA. (130 aa) |
| | parE | DNA topoisomerase IV, B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (680 aa) |
| | Snov_1372 | PFAM: regulatory protein TetR; KEGG: rle:RL1358 TetR family transcriptional regulator. (207 aa) |
| | Snov_1404 | KEGG: xau:Xaut_4676 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein. (479 aa) |
| | rplK | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (149 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (233 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (172 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (127 aa) |
| | rpsL | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (123 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (251 aa) |
| | rplD | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. (206 aa) |
| | rplW | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (98 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (277 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rplV | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (126 aa) |
| | rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (235 aa) |
| | rplP | Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (137 aa) |
| | rpmC | KEGG: rce:RC1_0719 50S ribosomal protein L29; TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (69 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
