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rplT rplT Snov_0580 Snov_0580 ctaG ctaG Snov_0688 Snov_0688 Snov_0728 Snov_0728 ccmE ccmE Snov_0730 Snov_0730 Snov_0733 Snov_0733 Snov_0768 Snov_0768 Snov_0827 Snov_0827 Snov_0975 Snov_0975 Snov_1143 Snov_1143 Snov_1237 Snov_1237 Snov_1238 Snov_1238 Snov_1241 Snov_1241 Snov_1286 Snov_1286 Snov_1321 Snov_1321 Snov_1375 Snov_1375 ureE ureE Snov_1587 Snov_1587 Snov_1647 Snov_1647 Snov_1655 Snov_1655 Snov_2135 Snov_2135 Snov_2212 Snov_2212 Snov_2537 Snov_2537 ccmC ccmC Snov_2780 Snov_2780 Snov_2781 Snov_2781 Snov_2859 Snov_2859 Snov_3079 Snov_3079 ftsZ ftsZ Snov_3345 Snov_3345 Snov_3461 Snov_3461 Snov_3487 Snov_3487 ccmA ccmA Snov_3617 Snov_3617 Snov_3648 Snov_3648 Snov_3713 Snov_3713 secB secB Snov_4024 Snov_4024 Snov_4095 Snov_4095 Snov_4154 Snov_4154 Snov_4194 Snov_4194 Snov_4196 Snov_4196 Snov_4197 Snov_4197
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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rplTRibosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (122 aa)
Snov_0580PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xau:Xaut_3308 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
ctaGCytochrome c oxidase assembly protein CtaG/Cox11; Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I; Belongs to the COX11/CtaG family. (208 aa)
Snov_0688PFAM: NADPH-dependent FMN reductase; KEGG: vap:Vapar_5720 NADPH-dependent FMN reductase. (189 aa)
Snov_0728TIGRFAM: cytochrome c-type biogenesis protein CcmI; KEGG: azc:AZC_1132 cytochrome c-type biogenesis protein. (374 aa)
ccmECcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. (148 aa)
Snov_0730KEGG: azc:AZC_1134 cytochrome c-type biogenesis protein; TIGRFAM: cytochrome c-type biogenesis protein CcmF; PFAM: cytochrome c assembly protein. (662 aa)
Snov_0733Cytochrome C biogenesis protein; Possible subunit of a heme lyase. (181 aa)
Snov_0768PFAM: plasmid stabilization system; KEGG: bam:Bamb_6594 plasmid stabilization system protein. (102 aa)
Snov_0827PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; KEGG: oca:OCAR_6268 cytochrome c biogenesis protein, transmembrane region. (639 aa)
Snov_0975PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: xau:Xaut_1525 cytochrome c biogenesis protein transmembrane region. (244 aa)
Snov_1143KEGG: met:M446_6121 hypothetical protein. (355 aa)
Snov_1237KEGG: oan:Oant_3249 thiol:disulfide interchange protein-like protein. (158 aa)
Snov_1238PFAM: Redoxin domain protein; prolipoprotein diacylglyceryl transferase; KEGG: mdi:METDI0741 putative thiol:disulfide interchange protein. (266 aa)
Snov_1241Protein-disulfide reductase; KEGG: xau:Xaut_1074 cytochrome c biogenesis protein transmembrane region; PFAM: cytochrome c biogenesis protein transmembrane region; Thioredoxin domain. (616 aa)
Snov_1286Arsenical resistance protein ArsH; KEGG: rme:Rmet_0328 NADPH-dependent FMN reductase; TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase. (250 aa)
Snov_1321PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; KEGG: oca:OCAR_6312 NADH dehydrogenase. (137 aa)
Snov_1375KEGG: azc:AZC_1573 hypothetical protein. (95 aa)
ureEUreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. (254 aa)
Snov_1587KEGG: azc:AZC_1274 arsenical resistance protein; TIGRFAM: arsenical resistance protein ArsH; PFAM: NADPH-dependent FMN reductase. (254 aa)
Snov_1647PFAM: Enoyl-CoA hydratase/isomerase; KEGG: azc:AZC_1544 putative enoyl-CoA hydratase. (370 aa)
Snov_1655TIGRFAM: riboflavin synthase, alpha subunit; KEGG: xau:Xaut_4279 riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein. (196 aa)
Snov_2135PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: azc:AZC_2949 cytochrome c biogenesis protein. (243 aa)
Snov_2212PFAM: ATP12 ATPase; KEGG: mno:Mnod_7121 ATP12 ATPase. (256 aa)
Snov_2537PFAM: Enoyl-CoA hydratase/isomerase; KEGG: azc:AZC_1808 enoyl-CoA hydratase. (267 aa)
ccmCHeme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family. (244 aa)
Snov_2780Heme exporter protein CcmD; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmD/CycX/HelD family. (54 aa)
Snov_2781Periplasmic protein thiol/disulfide oxidoreductase DsbE; KEGG: bra:BRADO0388 periplasmic thioredoxin (cytochrome c biogenesis); TIGRFAM: periplasmic protein thiol/disulphide oxidoreductase DsbE; PFAM: Redoxin domain protein. (198 aa)
Snov_2859PFAM: Asp/Glu/hydantoin racemase; KEGG: bph:Bphy_7794 Asp/Glu/hydantoin racemase. (245 aa)
Snov_3079KEGG: rpc:RPC_0787 hypothetical protein. (278 aa)
ftsZCell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. (575 aa)
Snov_3345KEGG: xau:Xaut_2798 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein. (608 aa)
Snov_3461PFAM: Redoxin domain protein; KEGG: azc:AZC_4663 putative thiol-disulfide isomerase. (259 aa)
Snov_3487Heme exporter protein CcmB; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family. (223 aa)
ccmAHeme exporter protein CcmA; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. CcmA exporter (TC 3.A.1.107) family. (211 aa)
Snov_3617PFAM: Asp/Glu/hydantoin racemase; KEGG: pde:Pden_4618 Asp/Glu racemase. (256 aa)
Snov_3648PFAM: Enoyl-CoA hydratase/isomerase; KEGG: har:HEAR2723 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (260 aa)
Snov_3713PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: azc:AZC_0072 putative amidohydrolase. (357 aa)
secBProtein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. (155 aa)
Snov_4024PFAM: NADPH-dependent FMN reductase; KEGG: mes:Meso_0682 NADPH-dependent FMN reductase. (194 aa)
Snov_4095PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rsk:RSKD131_4204 short chain enoyl-CoA hydratase. (264 aa)
Snov_4154PFAM: Asp/Glu/hydantoin racemase; KEGG: mlo:mlr7137 arylmalonate decarboxylase. (261 aa)
Snov_4194KEGG: mch:Mchl_4512 MxaA protein, putative. (308 aa)
Snov_4196KEGG: msl:Msil_0479 hypothetical protein. (186 aa)
Snov_4197SMART: von Willebrand factor type A; KEGG: rpc:RPC_1916 von Willebrand factor, type A. (334 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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