STRINGSTRING
Snov_2637 Snov_2637 Snov_0296 Snov_0296 Snov_0471 Snov_0471 Snov_0519 Snov_0519 Snov_0631 Snov_0631 anmK anmK Snov_1728 Snov_1728 Snov_2530 Snov_2530 Snov_2630 Snov_2630 Snov_2636 Snov_2636 Snov_2772 Snov_2772 Snov_2888 Snov_2888 Snov_2983 Snov_2983 Snov_2987 Snov_2987 Snov_3241 Snov_3241 edd edd Snov_3518 Snov_3518 Snov_3528 Snov_3528 Snov_3632 Snov_3632 Snov_3646 Snov_3646 Snov_4073 Snov_4073 Snov_4074 Snov_4074 Snov_4099 Snov_4099 Snov_4146 Snov_4146 uxuA uxuA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_2637PFAM: alanine racemase domain protein; KEGG: pde:Pden_3919 alanine racemase domain-containing protein. (391 aa)
Snov_0296Phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (409 aa)
Snov_0471PFAM: Gluconate transporter; KEGG: tle:Tlet_1725 gluconate transporter. (444 aa)
Snov_05195-carboxymethyl-2-hydroxymuconate Delta-isomerase; KEGG: gdi:GDI_0995 putative fumarylacetoacetate (FAA) hydrolase protein; PFAM: fumarylacetoacetate (FAA) hydrolase. (281 aa)
Snov_0631PFAM: Phytanoyl-CoA dioxygenase; KEGG: scl:sce3325 hypothetical protein. (266 aa)
anmKProtein of unknown function UPF0075; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family. (384 aa)
Snov_1728KEGG: azc:AZC_0555 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (254 aa)
Snov_2530PFAM: aminotransferase class V; KEGG: rme:Rmet_5630 aminotransferase, class V. (401 aa)
Snov_2630Vinylacetyl-CoA Delta-isomerase; KEGG: rop:ROP_14550 putative hydroxylase; PFAM: 4-hydroxyphenylacetate 3-hydroxylase. (506 aa)
Snov_2636KEGG: pde:Pden_3918 ornithine cyclodeaminase; PFAM: ornithine cyclodeaminase/mu-crystallin. (320 aa)
Snov_2772KEGG: xau:Xaut_5019 phenylacetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase. (476 aa)
Snov_2888PFAM: Amidohydrolase 3; KEGG: amidohydrolase 3. (567 aa)
Snov_2983KEGG: azc:AZC_3488 glyoxylate carboligase; TIGRFAM: glyoxylate carboligase; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; Belongs to the TPP enzyme family. (588 aa)
Snov_2987PFAM: fumarylacetoacetate (FAA) hydrolase; Domain of unknown function DUF2437; KEGG: oca:OCAR_6557 fumarylacetoacetate. (257 aa)
Snov_3241KEGG: azc:AZC_0555 2-dehydro-3-deoxyglucarate aldolase; PFAM: HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family. (253 aa)
edd6-phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family. (612 aa)
Snov_3518PFAM: MaoC domain protein dehydratase; KEGG: MaoC domain protein dehydratase. (172 aa)
Snov_3528KEGG: fal:FRAAL4864 hypothetical protein. (159 aa)
Snov_3632PFAM: monooxygenase FAD-binding; KEGG: azc:AZC_0736 FAD-binding monooxygenase. (526 aa)
Snov_3646KEGG: met:M446_4286 hypothetical protein. (187 aa)
Snov_40732-dehydro-3-deoxygalactonokinase; KEGG: met:M446_4620 2-keto-3-deoxy-galactonokinase; PFAM: 2-keto-3-deoxy-galactonokinase. (317 aa)
Snov_4074PFAM: KDPG and KHG aldolase; KEGG: azc:AZC_4410 2-keto-3-deoxy-6-phosphogluconate aldolase. (208 aa)
Snov_4099PFAM: monooxygenase FAD-binding; KEGG: mex:Mext_3068 monooxygenase FAD-binding. (496 aa)
Snov_4146PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: har:HEAR0851 putative fumarylacetoacetate hydrolase family protein. (234 aa)
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate. (404 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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