STRINGSTRING
Snov_2816 Snov_2816 Snov_3631 Snov_3631 Snov_4298 Snov_4298 dut dut gpsA gpsA Snov_1893 Snov_1893 Snov_1891 Snov_1891 surE surE Snov_1775 Snov_1775 Snov_1333 Snov_1333 Snov_2810 Snov_2810 Snov_3155 Snov_3155
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_2816PFAM: Heparinase II/III family protein; KEGG: azc:AZC_4697 hypothetical protein. (576 aa)
Snov_3631KEGG: mno:Mnod_7300 hypothetical protein. (119 aa)
Snov_4298PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: dfe:Dfer_3264 glucosamine/galactosamine-6-phosphate isomerase. (254 aa)
dutDeoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. (161 aa)
gpsAKEGG: azc:AZC_0263 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (329 aa)
Snov_1893MTA/SAH nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (249 aa)
Snov_1891TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: azc:AZC_2807 deoxyguanosinetriphosphate; SMART: metal-dependent phosphohydrolase HD region; Belongs to the dGTPase family. Type 2 subfamily. (390 aa)
surEStationary-phase survival protein SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. (254 aa)
Snov_1775KEGG: xau:Xaut_4391 MazG family protein; TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase. (277 aa)
Snov_1333N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: xau:Xaut_4667 N-acetylmuramoyl-L-alanine amidase; SMART: cell wall hydrolase/autolysin. (435 aa)
Snov_2810Lysozyme; KEGG: mar:MAE_60270 lysozyme; PFAM: glycoside hydrolase family 24; Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein. (508 aa)
Snov_3155N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Peptidoglycan-binding domain 1 protein; KEGG: azc:AZC_4549 N-acetylmuramoyl-L-alanine amidase; SMART: N-acetylmuramoyl-L-alanine amidase family 2. (280 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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