STRINGSTRING
Snov_1962 Snov_1962 Snov_1996 Snov_1996 Snov_2168 Snov_2168 Snov_2178 Snov_2178 rpoD rpoD dnaG dnaG Snov_2426 Snov_2426 Snov_2657 Snov_2657 Snov_2673 Snov_2673 rpoH rpoH Snov_2708 Snov_2708 Snov_2851 Snov_2851 Snov_2962 Snov_2962 Snov_3066 Snov_3066 Snov_3266 Snov_3266 Snov_3603 Snov_3603 Snov_3643 Snov_3643 Snov_3695 Snov_3695 Snov_4368 Snov_4368 nadE-2 nadE-2 Snov_3886 Snov_3886 Snov_3995 Snov_3995 Snov_3975 Snov_3975 Snov_0003 Snov_0003 Snov_0051 Snov_0051 Snov_0053 Snov_0053 Snov_0226 Snov_0226 Snov_4133 Snov_4133 Snov_0352 Snov_0352 Snov_0398 Snov_0398 Snov_0399 Snov_0399 Snov_0526 Snov_0526 nadE nadE Snov_0921 Snov_0921 Snov_0992 Snov_0992 Snov_1101 Snov_1101 Snov_1110 Snov_1110 Snov_1173 Snov_1173 rplK rplK rplA rplA rpoB rpoB rpoC rpoC dnaE2 dnaE2 rpoA rpoA Snov_1628 Snov_1628 rpoZ rpoZ Snov_1840 Snov_1840 Snov_1848 Snov_1848 Snov_1891 Snov_1891
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_1962KEGG: oca:OCAR_6148 virulence-associated protein E. (280 aa)
Snov_1996PFAM: ATP-binding region ATPase domain protein; KEGG: swo:Swol_1794 putative anti-sigma regulatory factor, serine/threonine protein kinase. (139 aa)
Snov_2168Putative RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rpe:RPE_4735 RNA polymerase ECF-subfamily sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (411 aa)
Snov_2178KEGG: cak:Caul_0759 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (181 aa)
rpoDRNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (666 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (645 aa)
Snov_2426KEGG: bid:Bind_0982 FmdB family regulatory protein; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB. (117 aa)
Snov_2657PFAM: protein of unknown function DUF88; KEGG: mno:Mnod_8422 hypothetical protein. (208 aa)
Snov_2673KEGG: bpt:Bpet4157 LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR. (284 aa)
rpoHRNA polymerase, sigma 32 subunit, RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (303 aa)
Snov_2708KEGG: xau:Xaut_2818 histidinol-phosphate phosphatase, putative; TIGRFAM: histidinol-phosphate phosphatase; PFAM: inositol monophosphatase. (261 aa)
Snov_2851KEGG: azc:AZC_3842 hypothetical protein. (344 aa)
Snov_2962KEGG: xau:Xaut_3052 DNA repair protein RadC; TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; Belongs to the UPF0758 family. (217 aa)
Snov_3066PFAM: inositol monophosphatase; KEGG: xau:Xaut_3055 inositol-phosphate phosphatase. (266 aa)
Snov_3266KEGG: xau:Xaut_2674 ECF subfamily RNA polymerase sigma-24 factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (172 aa)
Snov_3603PFAM: cyclase family protein; KEGG: mex:Mext_3370 cyclase family protein. (231 aa)
Snov_3643KEGG: pag:PLES_16511 putative sigma-70 factor, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2. (164 aa)
Snov_3695KEGG: met:M446_4806 RNA polymerase factor sigma-32; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein. (293 aa)
Snov_4368RecA-family ATPase-like protein; KEGG: pth:PTH_1394 hypothetical protein. (516 aa)
nadE-2NAD synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (680 aa)
Snov_3886PFAM: peptidase M16 domain protein; KEGG: azc:AZC_4243 hypothetical protein. (463 aa)
Snov_3995PFAM: inositol monophosphatase; KEGG: azc:AZC_2379 putative myo-inositol monophosphatase 2 family protein. (273 aa)
Snov_3975RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: rsk:RSKD131_3273 transcriptional regulator, fis family; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)
Snov_0003KEGG: avi:Avi_6150 bacteriophage protein. (113 aa)
Snov_0051KEGG: met:M446_2725 two-component response regulator; PFAM: response regulator receiver; Sigma-70 region 4 type 2; SMART: response regulator receiver. (267 aa)
Snov_0053RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: nwi:Nwi_2773 RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; Belongs to the sigma-70 factor family. ECF subfamily. (183 aa)
Snov_0226KEGG: rle:pRL80036 hypothetical protein. (317 aa)
Snov_4133PFAM: NMT1/THI5 like domain protein; KEGG: bra:BRADO5375 hypothetical protein. (340 aa)
Snov_0352RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (532 aa)
Snov_0398KEGG: azc:AZC_0691 putative nitrate transport protein. (383 aa)
Snov_0399KEGG: xau:Xaut_2504 nitrate-binding protein NrtA precursor, periplasmic. (445 aa)
Snov_0526KEGG: bpt:Bpet4157 LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR. (293 aa)
nadENAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (557 aa)
Snov_0921KEGG: hha:Hhal_1150 hypothetical protein. (396 aa)
Snov_0992RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: bja:bll6484 ECF sigma factor; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (188 aa)
Snov_1101PFAM: cyclase family protein; KEGG: smd:Smed_2035 cyclase family protein. (272 aa)
Snov_1110PFAM: cyclase family protein; KEGG: rpb:RPB_4390 putative cyclase. (261 aa)
Snov_1173Regulatory protein, FmdB family; KEGG: oca:OCAR_7086 glutamine amidotransferase, class-II; TIGRFAM: regulatory protein, FmdB family; PFAM: Putative regulatory protein FmdB. (100 aa)
rplKRibosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (149 aa)
rplARibosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (233 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1376 aa)
rpoCDNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1396 aa)
dnaE2DNA polymerase III, alpha subunit; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1140 aa)
rpoADNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (338 aa)
Snov_1628PFAM: protein of unknown function DUF88; KEGG: azc:AZC_1252 hypothetical protein. (203 aa)
rpoZDNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (129 aa)
Snov_1840TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: xau:Xaut_4284 DNA polymerase III subunit alpha; SMART: phosphoesterase PHP domain protein. (1149 aa)
Snov_1848PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: azc:AZC_1683 metallo-beta-lactamase family hydrolase. (562 aa)
Snov_1891TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: azc:AZC_2807 deoxyguanosinetriphosphate; SMART: metal-dependent phosphohydrolase HD region; Belongs to the dGTPase family. Type 2 subfamily. (390 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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