STRINGSTRING
Snov_0087 Snov_0087 Snov_0268 Snov_0268 Snov_0273 Snov_0273 Snov_0275 Snov_0275 Snov_0291 Snov_0291 Snov_0342 Snov_0342 Snov_0344 Snov_0344 mutM mutM Snov_0677 Snov_0677 Snov_0727 Snov_0727 Snov_0829 Snov_0829 Snov_0895 Snov_0895 Snov_1028 Snov_1028 lptD lptD Snov_1157 Snov_1157 Snov_1168 Snov_1168 Snov_1239 Snov_1239 Snov_1329 Snov_1329 Snov_1334 Snov_1334 Snov_1382 Snov_1382 Snov_1407 Snov_1407 Snov_1418 Snov_1418 Snov_1424 Snov_1424 Snov_1615 Snov_1615 Snov_1621 Snov_1621 Snov_1622 Snov_1622 Snov_1661 Snov_1661 rlpA rlpA Snov_1718 Snov_1718 Snov_1755 Snov_1755 rlpA-2 rlpA-2 Snov_1813 Snov_1813 bamA bamA Snov_1925 Snov_1925 Snov_1940 Snov_1940 Snov_2156 Snov_2156 Snov_2255 Snov_2255 Snov_2294 Snov_2294 Snov_2325 Snov_2325 Snov_2335 Snov_2335 Snov_2337 Snov_2337 Snov_2367 Snov_2367 Snov_2373 Snov_2373 Snov_2539 Snov_2539 Snov_2623 Snov_2623 Snov_2716 Snov_2716 Snov_2735 Snov_2735 mtgA mtgA Snov_2789 Snov_2789 Snov_2882 Snov_2882 Snov_2965 Snov_2965 Snov_2970 Snov_2970 Snov_2998 Snov_2998 pal pal Snov_3080 Snov_3080 bamD bamD Snov_3156 Snov_3156 Snov_3159 Snov_3159 Snov_3165 Snov_3165 Snov_3318 Snov_3318 Snov_3364 Snov_3364 Snov_3641 Snov_3641 Snov_3719 Snov_3719 Snov_3819 Snov_3819 Snov_3860 Snov_3860 Snov_3947 Snov_3947 Snov_3973 Snov_3973 Snov_4497 Snov_4497
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0087PFAM: aminotransferase class I and II; KEGG: xau:Xaut_0300 aspartate aminotransferase. (402 aa)
Snov_0268KEGG: azc:AZC_1198 hypothetical protein. (167 aa)
Snov_0273PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: azc:AZC_1194 ErfK/YbiS/YcfS/YnhG precursor. (200 aa)
Snov_0275PFAM: Extensin family protein; KEGG: xau:Xaut_2474 extensin family protein. (450 aa)
Snov_0291PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpb:RPB_1841 ErfK/YbiS/YcfS/YnhG. (332 aa)
Snov_0342PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mdi:METDI0732 hypothetical protein. (225 aa)
Snov_0344Glutamate--cysteine ligase GCS2; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. (374 aa)
mutMformamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (299 aa)
Snov_0677KEGG: xau:Xaut_1653 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase. (749 aa)
Snov_0727PFAM: 17 kDa surface antigen; KEGG: xau:Xaut_3178 LipA a lipoprotein. (155 aa)
Snov_0829PFAM: surface antigen (D15); KEGG: xau:Xaut_4224 surface antigen (D15). (668 aa)
Snov_0895PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bja:blr7232 hypothetical protein. (191 aa)
Snov_1028PFAM: acid phosphatase (Class B); KEGG: mno:Mnod_3004 acid phosphatase (class B). (235 aa)
lptDOrganic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (826 aa)
Snov_1157KEGG: pde:Pden_4723 NapC/NirT family periplasmic nitrate (or nitrite) reductase C-type cytochrome; TIGRFAM: periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; PFAM: NapC/NirT cytochrome c domain protein. (234 aa)
Snov_1168KEGG: bmr:BMI_II228 hypothetical protein. (156 aa)
Snov_1239PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_1072 ErfK/YbiS/YcfS/YnhG family protein. (225 aa)
Snov_1329PFAM: aminotransferase class I and II; KEGG: azc:AZC_3070 aminotransferase. (391 aa)
Snov_1334KEGG: azc:AZC_3625 penicillin-binding protein 1A precursor; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase. (812 aa)
Snov_1382PFAM: aminotransferase class I and II; KEGG: azc:AZC_1575 hypothetical protein. (394 aa)
Snov_1407PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mpo:Mpop_0378 ErfK/YbiS/YcfS/YnhG family protein. (233 aa)
Snov_1418PFAM: Lytic transglycosylase catalytic; Sporulation domain protein; KEGG: met:M446_4519 lytic transglycosylase catalytic. (331 aa)
Snov_1424PFAM: OmpA/MotB domain protein; KEGG: azc:AZC_0780 OmpA family protein. (202 aa)
Snov_1615PFAM: OmpA/MotB domain protein; KEGG: nwi:Nwi_1814 OmpA/MotB. (336 aa)
Snov_1621PFAM: OmpA/MotB domain protein; KEGG: xau:Xaut_3825 OmpA/MotB domain-containing protein. (725 aa)
Snov_1622PFAM: Lytic transglycosylase catalytic; Tetratricopeptide TPR_4; KEGG: xau:Xaut_3828 lytic transglycosylase catalytic. (720 aa)
Snov_1661PFAM: SmpA/OmlA domain protein; KEGG: azc:AZC_2298 SmpA protein. (178 aa)
rlpARare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (173 aa)
Snov_1718PFAM: Lytic transglycosylase catalytic; KEGG: oan:Oant_0077 lytic transglycosylase catalytic. (183 aa)
Snov_1755KEGG: rhi:NGR_b09500 RkpR, polysaccharide export protein. (482 aa)
rlpA-2Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides. (357 aa)
Snov_1813KEGG: xau:Xaut_4379 PpiC-type peptidyl-prolyl cis-trans isomerase. (629 aa)
bamAOuter membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (822 aa)
Snov_1925KEGG: azc:AZC_2817 type I secretion outer membrane protein; TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein. (469 aa)
Snov_1940KEGG: mea:Mex_1p1572 hypothetical protein. (440 aa)
Snov_2156KEGG: azc:AZC_2223 lytic murein transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein. (415 aa)
Snov_2255PFAM: MltA-interacting MipA family protein; KEGG: azc:AZC_1663 hypothetical protein. (286 aa)
Snov_2294TIGRFAM: lytic murein transglycosylase; KEGG: bbt:BBta_4395 putative transglycolase. (272 aa)
Snov_2325PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rpt:Rpal_4131 ErfK/YbiS/YcfS/YnhG family protein. (401 aa)
Snov_2335KEGG: rpa:RPA3603 lytic murein transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein. (412 aa)
Snov_2337KEGG: azc:AZC_3790 putative ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (551 aa)
Snov_2367PFAM: aminotransferase class I and II; KEGG: xau:Xaut_2737 aminotransferase class I and II. (400 aa)
Snov_2373KEGG: mno:Mnod_1078 TonB-dependent receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug. (756 aa)
Snov_2539PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_1639 ErfK/YbiS/YcfS/YnhG family protein. (210 aa)
Snov_2623PFAM: FAD dependent oxidoreductase; KEGG: azc:AZC_0195 hypothetical protein. (428 aa)
Snov_2716KEGG: azc:AZC_0164 lytic murein transglycosylase precursor; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein. (455 aa)
Snov_2735PFAM: Propeptide PepSY amd peptidase M4; KEGG: hne:HNE_3212 hypothetical protein. (91 aa)
mtgAMonofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family. (222 aa)
Snov_2789PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: xau:Xaut_3112 PpiC-type peptidyl-prolyl cis-trans isomerase. (337 aa)
Snov_2882PFAM: Lytic transglycosylase catalytic; KEGG: azc:AZC_3829 lytic transglycosylase precursor. (220 aa)
Snov_2965PFAM: aminotransferase class I and II; KEGG: azc:AZC_0558 aspartate aminotransferase. (401 aa)
Snov_2970KEGG: rpc:RPC_1375 lytic murein transglycosylase; TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein. (411 aa)
Snov_2998TIGRFAM: urate catabolism protein; KEGG: bbt:BBta_7199 hypothetical protein; PFAM: polysaccharide deacetylase. (305 aa)
palPeptidoglycan-associated lipoprotein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. (164 aa)
Snov_3080Redoxin domain protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily. (161 aa)
bamDOuter membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. (305 aa)
Snov_3156PFAM: Lytic transglycosylase catalytic; KEGG: oan:Oant_1733 lytic transglycosylase catalytic. (175 aa)
Snov_3159PFAM: Extensin family protein; KEGG: azc:AZC_4252 hypothetical protein. (480 aa)
Snov_3165PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: mno:Mnod_5216 ErfK/YbiS/YcfS/YnhG family protein. (170 aa)
Snov_3318KEGG: xau:Xaut_1965 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (621 aa)
Snov_3364PFAM: protein of unknown function UPF0005; KEGG: azc:AZC_0959 hypothetical protein; Belongs to the BI1 family. (260 aa)
Snov_3641KEGG: msl:Msil_3324 TonB-dependent siderophore receptor; TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor plug; Secretin/TonB short domain; TonB-dependent receptor. (813 aa)
Snov_3719PFAM: monooxygenase FAD-binding; KEGG: mea:Mex_1p0258 FAD dependent oxidoreductase. (418 aa)
Snov_3819PFAM: MltA domain protein; 3D domain protein; KEGG: xau:Xaut_2049 MltA domain-containing protein. (416 aa)
Snov_3860PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: bid:Bind_1794 thiamine pyrophosphate binding domain-containing protein. (548 aa)
Snov_3947PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: rhi:NGR_c08420 hypothetical protein. (225 aa)
Snov_3973PFAM: protein of unknown function UPF0005; KEGG: mlo:mlr0409 hypothetical protein; Belongs to the BI1 family. (239 aa)
Snov_4497KEGG: xau:Xaut_0362 1A family penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase. (722 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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