STRINGSTRING
Snov_0827 Snov_0827 Snov_0975 Snov_0975 Snov_2571 Snov_2571 Snov_3213 Snov_3213 Snov_3717 Snov_3717 Snov_3735 Snov_3735 Snov_3769 Snov_3769 Snov_3770 Snov_3770 Snov_3958 Snov_3958 Snov_2358 Snov_2358 Snov_2452 Snov_2452 Snov_2141 Snov_2141 Snov_2135 Snov_2135 Snov_0431 Snov_0431 Snov_0470 Snov_0470 Snov_2112 Snov_2112 Snov_1766 Snov_1766 Snov_1757 Snov_1757
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0827PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; cytochrome c biogenesis protein transmembrane region; KEGG: oca:OCAR_6268 cytochrome c biogenesis protein, transmembrane region. (639 aa)
Snov_0975PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: xau:Xaut_1525 cytochrome c biogenesis protein transmembrane region. (244 aa)
Snov_2571TIGRFAM: cobaltochelatase, CobN subunit; KEGG: mlo:mlr1377 cobaltochelatase subunit CobN; PFAM: CobN/magnesium chelatase. (1160 aa)
Snov_3213PFAM: glycosyl transferase group 1; KEGG: eba:ebA5881 glycosyl transferase. (355 aa)
Snov_3717PFAM: glycosyl transferase group 1; KEGG: azc:AZC_0068 glycosyltransferase. (385 aa)
Snov_3735PFAM: glycosyl transferase group 1; KEGG: mno:Mnod_4662 glycosyl transferase group 1. (348 aa)
Snov_3769PFAM: glycosyl transferase group 1; KEGG: mtp:Mthe_1073 glycosyl transferase, group 1. (1241 aa)
Snov_3770TIGRFAM: methyltransferase FkbM family; KEGG: jan:Jann_4282 methyltransferase FkbM. (414 aa)
Snov_3958CBS domain containing protein; KEGG: azc:AZC_0011 HlyC/CorC family transporter; PFAM: CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein. (423 aa)
Snov_2358PFAM: glycosyl transferase group 1; KEGG: rhi:NGR_c15710 lipopolysaccharide core biosynthesis mannosyltransferase LpsB. (357 aa)
Snov_2452TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase; KEGG: xau:Xaut_2345 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (209 aa)
Snov_2141TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: bra:BRADO2842 ribulose-phosphate 3-epimerase (pentose-5-phosphate 3-epimerase) (PPE) (R5P3E); PFAM: ribulose-phosphate 3-epimerase. (228 aa)
Snov_2135PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: azc:AZC_2949 cytochrome c biogenesis protein. (243 aa)
Snov_0431TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: azc:AZC_1810 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (226 aa)
Snov_0470TIGRFAM: beta-galactosidase; KEGG: mag:amb0219 beta-glucosidase A; PFAM: glycoside hydrolase family 1. (493 aa)
Snov_2112PFAM: glycosyl transferase group 1; KEGG: xau:Xaut_4109 glycosyl transferase group 1. (351 aa)
Snov_1766PFAM: glycosyl transferase group 1; KEGG: azc:AZC_0046 glycosyltransferase. (472 aa)
Snov_1757PFAM: glycosyl transferase group 1; KEGG: mno:Mnod_5364 glycosyl transferase group 1. (480 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.