STRINGSTRING
Snov_3125 Snov_3125 Snov_0665 Snov_0665 ku ku ku-2 ku-2 Snov_1352 Snov_1352 Snov_1694 Snov_1694 Snov_2300 Snov_2300 Snov_2319 Snov_2319 Snov_2404 Snov_2404 Snov_2581 Snov_2581 Snov_3040 Snov_3040 ruvA ruvA Snov_3391 Snov_3391 rplU rplU Snov_3896 Snov_3896
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_3125PFAM: UvrD/REP helicase; KEGG: azc:AZC_4475 DNA helicase II. (833 aa)
Snov_0665PFAM: ROSMUCR transcriptional regulator; KEGG: azc:AZC_1086 putative transcriptional regulator. (140 aa)
kuKu protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (268 aa)
ku-2Ku protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. (287 aa)
Snov_1352PFAM: TfoX domain protein; KEGG: xau:Xaut_4760 TfoX domain-containing protein. (117 aa)
Snov_1694KEGG: xau:Xaut_4415 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein. (694 aa)
Snov_2300PFAM: protein of unknown function DUF1508; KEGG: ret:RHE_CH03509 hypothetical protein. (61 aa)
Snov_2319KEGG: rpt:Rpal_0858 hypothetical protein. (269 aa)
Snov_2404PFAM: UvrD/REP helicase; KEGG: mlo:mlr7946 ATP-dependent DNA helicase. (690 aa)
Snov_2581TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; KEGG: mlo:mll4050 DNA helicase RecQ; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein. (611 aa)
Snov_3040Putative TolA; KEGG: rpc:RPC_4752 putative TolA. (320 aa)
ruvAHolliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (205 aa)
Snov_3391PFAM: ROSMUCR transcriptional regulator; KEGG: xau:Xaut_1838 MucR family transcriptional regulator. (154 aa)
rplURibosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (102 aa)
Snov_3896PFAM: protein of unknown function DUF125 transmembrane; Rubrerythrin; KEGG: bja:blr7895 hypothetical protein. (318 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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