STRINGSTRING
Snov_0062 Snov_0062 Snov_2114 Snov_2114 Snov_1949 Snov_1949 Snov_1943 Snov_1943 Snov_0817 Snov_0817 Snov_0459 Snov_0459 Snov_0453 Snov_0453 Snov_0355 Snov_0355 Snov_0234 Snov_0234 Snov_2659 Snov_2659 Snov_2660 Snov_2660 Snov_2667 Snov_2667 Snov_2857 Snov_2857 Snov_2862 Snov_2862 Snov_2873 Snov_2873 Snov_3014 Snov_3014 Snov_3821 Snov_3821 Snov_3956 Snov_3956 Snov_4510 Snov_4510 Snov_4312 Snov_4312 Snov_2405 Snov_2405
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0062Putative phage repressor; PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: nwi:Nwi_0466 peptidase S24. (206 aa)
Snov_2114Transcriptional regulator, XRE family; KEGG: azc:AZC_1827 hypothetical protein; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein. (206 aa)
Snov_1949KEGG: bid:Bind_3182 XRE family transcriptional regulator. (81 aa)
Snov_1943KEGG: apt:APA01_22850 hypothetical protein. (78 aa)
Snov_0817Transcriptional regulator, XRE family; KEGG: scl:sce8724 transcriptional regulator; PFAM: Protein of unknown function DUF2083,transcriptional regulator; helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein. (471 aa)
Snov_0459Transcriptional regulator, XRE family; KEGG: azc:AZC_1503 transcriptional regulator; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein. (229 aa)
Snov_0453Transcriptional regulator, XRE family; KEGG: xau:Xaut_4724 hypothetical protein; PFAM: Protein of unknown function DUF2083,transcriptional regulator; helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein. (480 aa)
Snov_0355Hypothetical protein; KEGG: mno:Mnod_7736 transcriptional regulator, XRE family. (107 aa)
Snov_0234KEGG: mrd:Mrad2831_5929 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein. (200 aa)
Snov_2659Transcriptional regulator, XRE family; KEGG: oan:Oant_1704 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (81 aa)
Snov_2660KEGG: mno:Mnod_5702 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (123 aa)
Snov_2667KEGG: apt:APA01_22850 hypothetical protein. (71 aa)
Snov_2857Transcriptional regulator, XRE family; KEGG: ara:Arad_4804 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (72 aa)
Snov_2862PFAM: helix-turn-helix domain protein; KEGG: pde:Pden_0265 XRE family transcriptional regulator. (124 aa)
Snov_2873Transcriptional regulator, XRE family; KEGG: ara:Arad_4804 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (91 aa)
Snov_3014TIGRFAM: addiction module antidote protein, HigA family; KEGG: rpt:Rpal_3616 plasmid maintenance system antidote protein, XRE family. (97 aa)
Snov_3821Transcriptional regulator, XRE family; KEGG: azc:AZC_4603 hypothetical protein; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (121 aa)
Snov_3956KEGG: xau:Xaut_1815 XRE family transcriptional regulator; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (135 aa)
Snov_4510Hypothetical protein; KEGG: rlt:Rleg2_2457 peptidase S24 and S26 domain protein. (259 aa)
Snov_4312Helix-turn-helix domain protein; KEGG: mch:Mchl_0983 transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein. (82 aa)
Snov_2405Putative transcriptional regulator, XRE family; KEGG: ccs:CCNA_03612 transcriptional regulatory protein. (75 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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