STRINGSTRING
Snov_2270 Snov_2270 Snov_3916 Snov_3916 Snov_0151 Snov_0151 Snov_2820 Snov_2820
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_2270PFAM: Patatin; KEGG: reh:H16_B0139 hypothetical protein. (867 aa)
Snov_3916PFAM: Patatin; KEGG: rhi:NGR_c04200 putative patatin family protein. (322 aa)
Snov_0151PFAM: Patatin; KEGG: azc:AZC_1304 putative esterase. (368 aa)
Snov_2820PFAM: Patatin; KEGG: xau:Xaut_1886 patatin. (516 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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