STRINGSTRING
Snov_4444 Snov_4444 Snov_0068 Snov_0068 pheT pheT potA potA Snov_0506 Snov_0506 Snov_0507 Snov_0507 Snov_0640 Snov_0640 ccmE ccmE Snov_0819 Snov_0819 Snov_0837 Snov_0837 Snov_0845 Snov_0845 aspS aspS Snov_1123 Snov_1123 Snov_1124 Snov_1124 rne rne rpsL rpsL rplB rplB rpsQ rpsQ rnr rnr Snov_1610 Snov_1610 efp efp recO recO Snov_1677 Snov_1677 Snov_1694 Snov_1694 rimO rimO Snov_1912 Snov_1912 Snov_2444 Snov_2444 Snov_2459 Snov_2459 Snov_2719 Snov_2719 Snov_2907 Snov_2907 Snov_2917 Snov_2917 ruvA ruvA ligA ligA infA infA Snov_3523 Snov_3523 Snov_3724 Snov_3724 rho rho Snov_3868 Snov_3868 pnp pnp nusA nusA Snov_4104 Snov_4104 Snov_4105 Snov_4105 potA-5 potA-5 Snov_4330 Snov_4330
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_4444PFAM: (Uracil-5)-methyltransferase; KEGG: rpa:RPA0948 putative RNA methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (426 aa)
Snov_0068PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; KEGG: azc:AZC_0393 putative ATP dependent DNA ligase. (568 aa)
pheTTIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: azc:AZC_4450 phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (801 aa)
potASpermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (391 aa)
Snov_0506KEGG: met:M446_1974 ABC transporter related; PFAM: ABC transporter related; TOBE domain protein; SMART: AAA ATPase. (369 aa)
Snov_0507KEGG: met:M446_1973 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (365 aa)
Snov_0640KEGG: bja:bsl4595 cold shock protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein. (69 aa)
ccmECcmE/CycJ protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. (148 aa)
Snov_0819DNA ligase D; KEGG: rhi:NGR_b04710 putative ATP-dependent DNA ligase; TIGRFAM: DNA ligase D; DNA polymerase LigD, ligase domain protein; DNA ligase D, 3'-phosphoesterase domain protein; DNA polymerase LigD, polymerase domain protein; PFAM: ATP dependent DNA ligase; ATP dependent DNA ligase domain protein; DNA primase small subunit. (842 aa)
Snov_0837KEGG: bja:blr3224 ABC transporter ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (334 aa)
Snov_0845KEGG: smd:Smed_4132 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (362 aa)
aspSaspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (590 aa)
Snov_1123KEGG: met:M446_5491 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein. (70 aa)
Snov_1124KEGG: met:M446_5491 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein. (71 aa)
rneRibonuclease, Rne/Rng family; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (915 aa)
rpsLRibosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (123 aa)
rplBRibosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (277 aa)
rpsQ30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (82 aa)
rnrRibonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (778 aa)
Snov_1610KEGG: nwi:Nwi_1609 cold-shock protein, DNA-binding; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein. (199 aa)
efpTranslation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. (189 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (243 aa)
Snov_1677Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (185 aa)
Snov_1694KEGG: xau:Xaut_4415 DEAD/DEAH box helicase domain-containing protein; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein. (694 aa)
rimOMiaB-like tRNA modifying enzyme YliG; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily. (452 aa)
Snov_1912KEGG: sth:STH1782 sugar ABC transportor ATP-binding protein; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase. (362 aa)
Snov_2444KEGG: bbt:BBta_1730 cold-shock DNA-binding protein family protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein. (71 aa)
Snov_2459Export-related chaperone CsaA; KEGG: sme:SMc04456 putative chaperone protein; TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein. (117 aa)
Snov_2719PFAM: protein of unknown function DUF107; KEGG: azc:AZC_4274 hypothetical protein. (154 aa)
Snov_2907KEGG: met:M446_2980 cold-shock DNA-binding domain-containing protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein. (69 aa)
Snov_2917KEGG: msl:Msil_1056 cold-shock DNA-binding domain protein; PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein. (70 aa)
ruvAHolliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (205 aa)
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (725 aa)
infATranslation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (93 aa)
Snov_3523TIGRFAM: 2-aminoethylphosphonate ABC transport system, ATP-binding protein component; PFAM: ABC transporter related; Transport-associated OB domain protein; KEGG: smd:Smed_4878 ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (388 aa)
Snov_3724KEGG: rru:Rru_A1260 ABC transporter component; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (377 aa)
rhoTranscription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (421 aa)
Snov_3868Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (569 aa)
pnpPolyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (718 aa)
nusATranscription termination factor NusA; Participates in both transcription termination and antitermination. (536 aa)
Snov_4104ABC transporter related protein; KEGG: rhi:NGR_b04050 predicted MalK, ABC-type sugar transport systems, ATPase component MalK; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (370 aa)
Snov_4105ABC transporter related protein; KEGG: rhi:NGR_b04060 predicted MalK, ABC-type sugar transport systems, ATPase component MalK; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (336 aa)
potA-5Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (368 aa)
Snov_4330KEGG: xau:Xaut_0503 ABC transporter related; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (359 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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