STRINGSTRING
Snov_3454 Snov_3454 lysS lysS nadE nadE gltX gltX cysS cysS guaA guaA Snov_1192 Snov_1192 tyrS tyrS Snov_1404 Snov_1404 Snov_1483 Snov_1483 panC panC Snov_1545 Snov_1545 coaD coaD metG metG gltX-2 gltX-2 argS argS valS valS Snov_1936 Snov_1936 mnmA mnmA Snov_3023 Snov_3023 Snov_3024 Snov_3024 tilS tilS Snov_3280 Snov_3280 Snov_3284 Snov_3284 Snov_3316 Snov_3316 argG argG Snov_3404 Snov_3404 nadD nadD Snov_3455 Snov_3455 Snov_3498 Snov_3498 nadE-2 nadE-2 leuS leuS Snov_3881 Snov_3881 ileS ileS Snov_3967 Snov_3967 trpS trpS
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_3454PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: xau:Xaut_2159 electron transfer flavoprotein alpha/beta-subunit. (256 aa)
lysSTIGRFAM: lysyl-tRNA synthetase; KEGG: azc:AZC_0380 lysyl-tRNA synthetase; PFAM: Lysyl-tRNA synthetase, class Ic; Belongs to the class-I aminoacyl-tRNA synthetase family. (552 aa)
nadENAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (557 aa)
gltXglutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (451 aa)
cysSTIGRFAM: cysteinyl-tRNA synthetase; KEGG: bbt:BBta_3498 cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family. (464 aa)
guaAGMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. (533 aa)
Snov_1192PFAM: UspA domain protein; KEGG: bbr:BB2667 putative universal stress protein. (145 aa)
tyrStyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 1 subfamily. (423 aa)
Snov_1404KEGG: xau:Xaut_4676 deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein. (479 aa)
Snov_1483PFAM: protein of unknown function DUF218; KEGG: xau:Xaut_4460 hypothetical protein. (274 aa)
panCPantoate/beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family. (286 aa)
Snov_1545KEGG: azc:AZC_1568 osmosensitive K+ channel signal transduction histidine kinase; PFAM: Osmosensitive K channel His kinase sensor; UspA domain protein; histidine kinase A domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein. (903 aa)
coaDPantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (169 aa)
metGmethionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily. (524 aa)
gltX-2glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (478 aa)
argSTIGRFAM: arginyl-tRNA synthetase; KEGG: xau:Xaut_4245 arginyl-tRNA synthetase. (588 aa)
valSvalyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (945 aa)
Snov_1936KEGG: dar:Daro_2209 hypothetical protein. (461 aa)
mnmAtRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34. (395 aa)
Snov_3023PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: mch:Mchl_4039 electron transfer flavoprotein alpha subunit. (394 aa)
Snov_3024PFAM: Electron transfer flavoprotein alpha/beta-subunit; KEGG: mrd:Mrad2831_2481 electron transfer flavoprotein beta-subunit. (254 aa)
tilStRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (342 aa)
Snov_3280PFAM: phosphoadenosine phosphosulfate reductase; KEGG: rpb:RPB_1043 sulfate adenylyltransferase subunit 2. (268 aa)
Snov_3284Phosphoadenosine phosphosulfate reductase; Reduction of activated sulfate into sulfite. (248 aa)
Snov_3316PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: rpb:RPB_0814 glutamyl-Q tRNA(Asp) synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (287 aa)
argGTIGRFAM: argininosuccinate synthase; KEGG: xau:Xaut_2013 argininosuccinate synthase; PFAM: argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily. (408 aa)
Snov_3404PFAM: protein of unknown function DUF218; KEGG: xau:Xaut_0020 hypothetical protein. (228 aa)
nadDNicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (221 aa)
Snov_3455PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: azc:AZC_4665 electron transfer flavoprotein large subunit. (318 aa)
Snov_3498PFAM: PP-loop domain protein; KEGG: mrd:Mrad2831_1357 hypothetical protein. (274 aa)
nadE-2NAD synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (680 aa)
leuSKEGG: azc:AZC_0567 leucyl-tRNA synthetase; TIGRFAM: leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family. (870 aa)
Snov_3881KEGG: azc:AZC_0098 riboflavin kinase; TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; Belongs to the ribF family. (316 aa)
ileSisoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). (1019 aa)
Snov_3967PFAM: UspA domain protein; KEGG: azc:AZC_4680 UspA protein. (165 aa)
trpStryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family. (343 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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