STRINGSTRING
Snov_2266 Snov_2266 Snov_2367 Snov_2367 Snov_2530 Snov_2530 Snov_2965 Snov_2965 Snov_3004 Snov_3004 Snov_3218 Snov_3218 Snov_3414 Snov_3414 hisC hisC Snov_3710 Snov_3710 Snov_3711 Snov_3711 Snov_4057 Snov_4057 Snov_4452 Snov_4452 metZ metZ argD argD Snov_0063 Snov_0063 Snov_0087 Snov_0087 Snov_0094 Snov_0094 Snov_0274 Snov_0274 glyA glyA Snov_0933 Snov_0933 Snov_0934 Snov_0934 Snov_1137 Snov_1137 Snov_1343 Snov_1343 Snov_1347 Snov_1347 Snov_1364 Snov_1364 Snov_1382 Snov_1382 Snov_1396 Snov_1396 Snov_1569 Snov_1569 glyA-2 glyA-2 Snov_1758 Snov_1758 Snov_2038 Snov_2038 Snov_2229 Snov_2229
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_2266PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: azc:AZC_3959 aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (384 aa)
Snov_2367PFAM: aminotransferase class I and II; KEGG: xau:Xaut_2737 aminotransferase class I and II. (400 aa)
Snov_2530PFAM: aminotransferase class V; KEGG: rme:Rmet_5630 aminotransferase, class V. (401 aa)
Snov_2965PFAM: aminotransferase class I and II; KEGG: azc:AZC_0558 aspartate aminotransferase. (401 aa)
Snov_3004Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine. (391 aa)
Snov_3218KEGG: tmz:Tmz1t_1130 glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (399 aa)
Snov_3414PFAM: aminotransferase class I and II; KEGG: xau:Xaut_1842 aminotransferase class I and II. (416 aa)
hisCKEGG: xau:Xaut_0394 histidinol-phosphate aminotransferase; TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. (375 aa)
Snov_3710Threonine aldolase; Catalyzes the cleavage of L-allo-threonine and L-threonine to glycine and acetaldehyde. (350 aa)
Snov_3711KEGG: azc:AZC_0074 putative transcriptional regulator; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH. (461 aa)
Snov_4057PFAM: aminotransferase class-III; KEGG: rru:Rru_A3009 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (437 aa)
Snov_4452PFAM: aminotransferase class-III; KEGG: xau:Xaut_2299 beta alanine--pyruvate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (449 aa)
metZO-succinylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. (401 aa)
argDTIGRFAM: acetylornithine and succinylornithine aminotransferase; KEGG: azc:AZC_4028 acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. (402 aa)
Snov_0063PFAM: Pyridoxal-dependent decarboxylase; KEGG: smd:Smed_4423 pyridoxal-dependent decarboxylase. (477 aa)
Snov_0087PFAM: aminotransferase class I and II; KEGG: xau:Xaut_0300 aspartate aminotransferase. (402 aa)
Snov_0094TIGRFAM: 5-aminolevulinic acid synthase; KEGG: xau:Xaut_2126 5-aminolevulinate synthase; PFAM: aminotransferase class I and II. (408 aa)
Snov_0274PFAM: aminotransferase class-III; KEGG: mno:Mnod_5513 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (460 aa)
glyAGlycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (420 aa)
Snov_0933PFAM: aminotransferase class-III; KEGG: mlo:mll5149 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (459 aa)
Snov_0934PFAM: aminotransferase class-III; KEGG: xau:Xaut_2727 putative aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (459 aa)
Snov_1137PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: acr:Acry_0289 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (377 aa)
Snov_1343KEGG: azc:AZC_3616 putative cysteine desulfurase; PFAM: aminotransferase class V. (389 aa)
Snov_1347Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (420 aa)
Snov_1364PFAM: aminotransferase class I and II; KEGG: xau:Xaut_3522 aminotransferase. (405 aa)
Snov_1382PFAM: aminotransferase class I and II; KEGG: azc:AZC_1575 hypothetical protein. (394 aa)
Snov_1396TIGRFAM: cystathionine beta-lyase; KEGG: azc:AZC_1584 cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein. (403 aa)
Snov_1569PFAM: aminotransferase class-III; KEGG: bbt:BBta_1928 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (459 aa)
glyA-2Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. (434 aa)
Snov_1758KEGG: met:M446_0318 8-amino-7-oxononanoate synthase; PFAM: aminotransferase class I and II. (464 aa)
Snov_2038KEGG: azc:AZC_0292 transcriptional regulatory protein; PFAM: aminotransferase class I and II; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH. (466 aa)
Snov_2229TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; KEGG: azc:AZC_2180 O-acetylhomoserine aminocarboxypropyltransferase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein. (430 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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