STRINGSTRING
Snov_0109 Snov_0109 Snov_0322 Snov_0322 Snov_0378 Snov_0378 Snov_0380 Snov_0380 Snov_0391 Snov_0391 Snov_0524 Snov_0524 Snov_0554 Snov_0554 Snov_0684 Snov_0684 Snov_0841 Snov_0841 Snov_1201 Snov_1201 Snov_1305 Snov_1305 Snov_1570 Snov_1570 Snov_1723 Snov_1723 Snov_2682 Snov_2682 Snov_2699 Snov_2699 Snov_2760 Snov_2760 Snov_3012 Snov_3012 Snov_3019 Snov_3019 Snov_3193 Snov_3193 Snov_3228 Snov_3228 Snov_3458 Snov_3458 Snov_3751 Snov_3751 Snov_3762 Snov_3762 Snov_3777 Snov_3777 Snov_4045 Snov_4045 Snov_4319 Snov_4319
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0109KEGG: rpf:Rpic12D_4103 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (352 aa)
Snov_0322Transcriptional regulator, AraC family; TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; helix-turn-helix- domain containing protein AraC type; KEGG: xau:Xaut_2813 methylated-DNA--protein-cysteine methyltransferase; SMART: Helix-turn-helix, AraC domain. (292 aa)
Snov_0378Transcriptional regulator, AraC family with acetamidase/formamidase activity; KEGG: bja:blr4466 transcriptional regulatory protein; PFAM: Acetamidase/Formamidase; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (778 aa)
Snov_0380KEGG: bid:Bind_1549 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (304 aa)
Snov_0391KEGG: oan:Oant_2921 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain. (321 aa)
Snov_0524Transcriptional regulator, AraC family; KEGG: scl:sce1410 putative AraC-like transcription regulator; PFAM: helix-turn-helix- domain containing protein AraC type; protein of unknown function DUF861 cupin_3; SMART: Helix-turn-helix, AraC domain. (303 aa)
Snov_0554Transcriptional regulator, AraC family; KEGG: bja:blr5120 transcriptional regulatory protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (316 aa)
Snov_0684KEGG: vap:Vapar_5737 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (162 aa)
Snov_0841KEGG: mlo:mlr4907 AraC/XylS family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (330 aa)
Snov_1201KEGG: rle:RL3566 AraC family transcriptional regulator; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (336 aa)
Snov_1305Transcriptional regulator, AraC family; KEGG: mmw:Mmwyl1_2496 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (309 aa)
Snov_1570KEGG: bav:BAV3295 AraC-family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (319 aa)
Snov_1723KEGG: mpt:Mpe_A3599 AraC family transcriptional regulator; PFAM: Acetamidase/Formamidase; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (782 aa)
Snov_2682KEGG: rhi:NGR_b04790 putative transcriptional regulator protein, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (286 aa)
Snov_2699Transcriptional regulator, AraC family; KEGG: smd:Smed_5231 helix-turn-helix domain-containing protein; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (277 aa)
Snov_2760KEGG: pmy:Pmen_3214 AraC family transcriptional regulator; PFAM: AraC-type transcriptional regulator domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (294 aa)
Snov_3012KEGG: gbe:GbCGDNIH1_0077 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain. (351 aa)
Snov_3019Transcriptional regulator, AraC family; KEGG: azc:AZC_1175 transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain. (323 aa)
Snov_3193Transcriptional regulator, AraC family; KEGG: rsp:RSP_3514 transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; ThiJ/PfpI domain protein; SMART: Helix-turn-helix, AraC domain. (368 aa)
Snov_3228KEGG: rhi:NGR_b04790 putative transcriptional regulator protein, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (176 aa)
Snov_3458KEGG: rlt:Rleg2_5085 transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (302 aa)
Snov_3751Transcriptional regulator, AraC family; KEGG: azc:AZC_2279 transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (291 aa)
Snov_3762KEGG: bac:BamMC406_3471 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (349 aa)
Snov_3777KEGG: mno:Mnod_1034 transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (243 aa)
Snov_4045TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase DNA binding; Ada metal-binding domain protein; KEGG: sit:TM1040_2682 DNA-O6-methylguanine--protein-cysteine S-methyltransferase. (359 aa)
Snov_4319KEGG: ppw:PputW619_3129 AraC family transcriptional regulator; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain. (298 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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