STRINGSTRING
Snov_0113 Snov_0113 Snov_0124 Snov_0124 Snov_0287 Snov_0287 Snov_1045 Snov_1045 Snov_1383 Snov_1383 Snov_1566 Snov_1566 Snov_1708 Snov_1708 Snov_1910 Snov_1910 Snov_2134 Snov_2134 Snov_2308 Snov_2308 Snov_2398 Snov_2398 Snov_2420 Snov_2420 Snov_2542 Snov_2542 Snov_2543 Snov_2543 Snov_2624 Snov_2624 Snov_2927 Snov_2927 Snov_3178 Snov_3178 Snov_3229 Snov_3229 Snov_3231 Snov_3231 Snov_3249 Snov_3249 Snov_3252 Snov_3252 Snov_3524 Snov_3524 Snov_3531 Snov_3531 Snov_3556 Snov_3556 Snov_3561 Snov_3561 Snov_3599 Snov_3599 Snov_3671 Snov_3671 Snov_3841 Snov_3841 Snov_4085 Snov_4085 Snov_4135 Snov_4135 Snov_4220 Snov_4220 Snov_4299 Snov_4299 Snov_4322 Snov_4322
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0113PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bid:Bind_3074 multiple sugar-binding periplasmic receptor ChvE precursor. (356 aa)
Snov_0124PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:blr3200 ABC transporter sugar-binding protein. (321 aa)
Snov_0287PFAM: Extracellular ligand-binding receptor; KEGG: dia:Dtpsy_0172 extracellular ligand-binding receptor. (409 aa)
Snov_1045KEGG: mex:Mext_1846 hypothetical protein. (413 aa)
Snov_1383TIGRFAM: urea ABC transporter, urea binding protein; KEGG: rhi:NGR_b21780 ABC transporter, substrate binding protein. (435 aa)
Snov_1566PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sit:TM1040_3254 TMAO reductase system periplasmic protein TorT. (369 aa)
Snov_1708PFAM: basic membrane lipoprotein; KEGG: bbt:BBta_2057 putative ABC transporter (substrate-binding protein). (359 aa)
Snov_1910KEGG: mrd:Mrad2831_3409 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI. (342 aa)
Snov_2134PFAM: Extracellular ligand-binding receptor; KEGG: azc:AZC_2947 amino acid ABC transporter substrate binding protein. (366 aa)
Snov_2308PFAM: basic membrane lipoprotein; KEGG: met:M446_3191 basic membrane lipoprotein. (346 aa)
Snov_2398PFAM: Twin-arginine translocation pathway, signal sequence, subgroup; KEGG: oca:OCAR_6862 twin-arginine translocation pathway signal. (424 aa)
Snov_2420KEGG: rpd:RPD_3864 amide-UreA binding protein; TIGRFAM: urea ABC transporter, urea binding protein; PFAM: Extracellular ligand-binding receptor. (427 aa)
Snov_2542KEGG: bbt:BBta_3990 LacI family transcription regulator; PFAM: regulatory protein LacI; SMART: regulatory protein LacI. (345 aa)
Snov_2543KEGG: ara:Arad_3364 D-xylose ABC transporter, substrate-binding protein; TIGRFAM: D-xylose ABC transporter, periplasmic substrate-binding protein; PFAM: periplasmic binding protein/LacI transcriptional regulator. (346 aa)
Snov_2624PFAM: Extracellular ligand-binding receptor; KEGG: azc:AZC_0196 ABC-type branched-chain amino acid transport systems. (387 aa)
Snov_2927PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_1352 extracellular ligand-binding receptor. (432 aa)
Snov_3178KEGG: bbt:BBta_1951 putative aliphatic amidase expression-regulating protein (AmiC). (389 aa)
Snov_3229KEGG: bbt:BBta_3200 putative aliphatic amidase expression-regulating protein, AmiC. (382 aa)
Snov_3231KEGG: azc:AZC_3889 putative UreA/short-chain amide transport system substrate-binding protein precursor; TIGRFAM: urea ABC transporter, substrate-binding protein; PFAM: Extracellular ligand-binding receptor. (416 aa)
Snov_3249PFAM: Extracellular ligand-binding receptor; KEGG: mdi:METDI4400 putative extracellular ligand-binding receptor precursor. (385 aa)
Snov_3252PFAM: Extracellular ligand-binding receptor; KEGG: bbt:BBta_2996 putative amidase expression-regulating protein. (393 aa)
Snov_3524KEGG: rme:Rmet_4950 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI. (360 aa)
Snov_3531Transcriptional regulator, LacI family; KEGG: dth:DICTH_1600 transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI. (350 aa)
Snov_3556KEGG: pde:Pden_4771 ABC ribose transporter, periplasmic solute-binding protein. (319 aa)
Snov_3561Transcriptional regulator, LacI family; KEGG: rsq:Rsph17025_2680 alanine racemase; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI. (331 aa)
Snov_3599PFAM: Extracellular ligand-binding receptor; KEGG: xau:Xaut_4060 extracellular ligand-binding receptor. (396 aa)
Snov_3671KEGG: mlo:mll7019 hypothetical protein. (345 aa)
Snov_3841PFAM: Extracellular ligand-binding receptor; KEGG: azc:AZC_4473 IMP dehydrogenase. (416 aa)
Snov_4085PFAM: Extracellular ligand-binding receptor; KEGG: rpc:RPC_1695 extracellular ligand-binding receptor. (379 aa)
Snov_4135KEGG: pen:PSEEN4888 branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein. (416 aa)
Snov_4220PFAM: Extracellular ligand-binding receptor; KEGG: mrd:Mrad2831_5833 extracellular ligand-binding receptor. (386 aa)
Snov_4299KEGG: vei:Veis_1391 periplasmic binding protein/LacI transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI. (359 aa)
Snov_4322KEGG: pol:Bpro_5109 LacI family transcription regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI. (341 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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