STRINGSTRING
Snov_0044 Snov_0044 Snov_1295 Snov_1295 Snov_2956 Snov_2956
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0044PFAM: protein of unknown function DUF159; KEGG: bja:blr6107 hypothetical protein; Belongs to the SOS response-associated peptidase family. (227 aa)
Snov_1295PFAM: protein of unknown function DUF159; KEGG: bra:BRADO0486 hypothetical protein; Belongs to the SOS response-associated peptidase family. (246 aa)
Snov_2956PFAM: protein of unknown function DUF159; KEGG: oan:Oant_1531 hypothetical protein; Belongs to the SOS response-associated peptidase family. (214 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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