STRINGSTRING
Snov_0431 Snov_0431 Snov_0558 Snov_0558 Snov_0839 Snov_0839 Snov_0847 Snov_0847 Snov_2141 Snov_2141 xylA xylA xylB xylB Snov_2717 Snov_2717 Snov_3242 Snov_3242 Snov_3257 Snov_3257 Snov_3258 Snov_3258 kduI kduI Snov_3337 Snov_3337 Snov_3728 Snov_3728 Snov_4081 Snov_4081 Snov_4290 Snov_4290 Snov_4292 Snov_4292 uxuA uxuA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0431TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: azc:AZC_1810 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (226 aa)
Snov_0558TIGRFAM: nucleotide sugar dehydrogenase; KEGG: oan:Oant_4414 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase. (463 aa)
Snov_0839FGGY-family pentulose kinase; KEGG: bbt:BBta_0920 putative sugar kinase (ribulo-/ribitol kinase); TIGRFAM: FGGY-family pentulose kinase; PFAM: Carbohydrate kinase, FGGY-like. (547 aa)
Snov_0847PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: bid:Bind_2341 alcohol dehydrogenase. (343 aa)
Snov_2141TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: bra:BRADO2842 ribulose-phosphate 3-epimerase (pentose-5-phosphate 3-epimerase) (PPE) (R5P3E); PFAM: ribulose-phosphate 3-epimerase. (228 aa)
xylATIGRFAM: xylose isomerase; KEGG: bra:BRADO2360 xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family. (439 aa)
xylBXylulokinase; KEGG: bid:Bind_3807 xylulokinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like. (485 aa)
Snov_2717TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; KEGG: xau:Xaut_0389 UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase. (296 aa)
Snov_3242KEGG: bra:BRADO6988 dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; Belongs to the IlvD/Edd family. (584 aa)
Snov_3257PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: oan:Oant_3342 SMP-30/gluconolaconase/LRE domain-containing protein. (298 aa)
Snov_3258KEGG: rhi:NGR_b17650 2-deoxy-D-gluconate 3-dehydrogenase protein; TIGRFAM: 2-deoxy-D-gluconate 3-dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR. (254 aa)
kduI4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family. (280 aa)
Snov_3337TIGRFAM: nucleotide sugar dehydrogenase; KEGG: azc:AZC_2260 UDP-glucose 6-dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase. (438 aa)
Snov_3728PFAM: Carbohydrate kinase, FGGY-like; KEGG: ara:Arad_9879 xylulokinase protein. (503 aa)
Snov_4081PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: xau:Xaut_0427 3-hydroxyacyl-CoA dehydrogenase. (314 aa)
Snov_4290Galactarate dehydratase; KEGG: azc:AZC_3340 altronate hydrolase; PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain protein. (512 aa)
Snov_4292PFAM: Mannitol dehydrogenase domain; Mannitol dehydrogenase rossman domain; KEGG: azc:AZC_3347 mannitol dehydrogenase. (505 aa)
uxuAMannonate dehydratase; Catalyzes the dehydration of D-mannonate. (404 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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