STRINGSTRING
Snov_0274 Snov_0274 Snov_0326 Snov_0326 Snov_0327 Snov_0327 Snov_0482 Snov_0482 Snov_0571 Snov_0571 Snov_0580 Snov_0580 Snov_0599 Snov_0599 Snov_0807 Snov_0807 Snov_1245 Snov_1245 Snov_1362 Snov_1362 Snov_1569 Snov_1569 Snov_1602 Snov_1602 Snov_1606 Snov_1606 Snov_1616 Snov_1616 Snov_2243 Snov_2243 Snov_2736 Snov_2736 Snov_2737 Snov_2737 Snov_2821 Snov_2821 Snov_2859 Snov_2859 Snov_2897 Snov_2897 Snov_3317 Snov_3317 Snov_3318 Snov_3318 Snov_3319 Snov_3319 Snov_3320 Snov_3320 Snov_3368 Snov_3368 Snov_3456 Snov_3456 Snov_3495 Snov_3495 Snov_3532 Snov_3532 Snov_3617 Snov_3617 Snov_3651 Snov_3651 Snov_3725 Snov_3725 Snov_3739 Snov_3739 Snov_3873 Snov_3873 Snov_4048 Snov_4048 Snov_4154 Snov_4154 Snov_4227 Snov_4227 Snov_4228 Snov_4228 Snov_4329 Snov_4329 Snov_4334 Snov_4334
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0274PFAM: aminotransferase class-III; KEGG: mno:Mnod_5513 aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (460 aa)
Snov_0326KEGG: azc:AZC_2376 acetolactate synthase large subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding. (586 aa)
Snov_0327KEGG: xau:Xaut_1489 acetolactate synthase, small subunit; TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein. (171 aa)
Snov_0482KEGG: rpc:RPC_1050 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (370 aa)
Snov_0571PFAM: thiamine pyrophosphate protein domain protein TPP-binding; thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; KEGG: mrd:Mrad2831_2117 thiamine pyrophosphate protein; Belongs to the TPP enzyme family. (563 aa)
Snov_0580PFAM: Enoyl-CoA hydratase/isomerase; KEGG: xau:Xaut_3308 enoyl-CoA hydratase/isomerase; Belongs to the enoyl-CoA hydratase/isomerase family. (257 aa)
Snov_0599KEGG: azc:AZC_2243 acetoacetyl-CoA synthetase; TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase. (655 aa)
Snov_0807KEGG: oca:OCAR_7071 succinate-semialdehyde dehydrogenase [NADP+] (ssdh); PFAM: Aldehyde Dehydrogenase. (486 aa)
Snov_1245PFAM: Aldehyde Dehydrogenase; KEGG: xau:Xaut_2714 aldehyde dehydrogenase. (476 aa)
Snov_1362KEGG: xau:Xaut_3523 poly(R)-hydroxyalkanoic acid synthase, class I; TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: Poly-beta-hydroxybutyrate polymerase domain protein; alpha/beta hydrolase fold. (839 aa)
Snov_1569PFAM: aminotransferase class-III; KEGG: bbt:BBta_1928 aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (459 aa)
Snov_1602TIGRFAM: tartrate dehydrogenase; KEGG: mno:Mnod_1445 tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase. (368 aa)
Snov_1606TIGRFAM: tartrate dehydrogenase; KEGG: reu:Reut_C5899 tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase. (361 aa)
Snov_1616TIGRFAM: succinate CoA transferase; KEGG: azc:AZC_3728 acetyl-CoA hydrolase; PFAM: acetyl-CoA hydrolase/transferase. (497 aa)
Snov_2243PFAM: short-chain dehydrogenase/reductase SDR; KEGG: psa:PST_2001 3-hydroxybutyrate dehydrogenase. (279 aa)
Snov_2736KEGG: rhi:NGR_c32710 acetoacetyl-CoA reductase; TIGRFAM: acetoacetyl-CoA reductase; PFAM: short-chain dehydrogenase/reductase SDR. (241 aa)
Snov_2737KEGG: bja:bll0226 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (390 aa)
Snov_2821KEGG: bid:Bind_2696 3-hydroxybutyrate dehydrogenase; TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR. (259 aa)
Snov_2859PFAM: Asp/Glu/hydantoin racemase; KEGG: bph:Bphy_7794 Asp/Glu/hydantoin racemase. (245 aa)
Snov_2897KEGG: atc:AGR_L_2660 hypothetical protein; PFAM: Aldehyde Dehydrogenase. (479 aa)
Snov_3317KEGG: xau:Xaut_1964 succinate dehydrogenase and fumarate reductase iron-sulfur protein; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. (260 aa)
Snov_3318KEGG: xau:Xaut_1965 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (621 aa)
Snov_3319KEGG: azc:AZC_3744 succinate dehydrogenase hydrophobic membrane anchor protein; TIGRFAM: succinate dehydrogenase, hydrophobic membrane anchor protein; PFAM: succinate dehydrogenase cytochrome b subunit. (136 aa)
Snov_3320KEGG: xau:Xaut_1967 succinate dehydrogenase cytochrome b556 subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit. (130 aa)
Snov_3368TIGRFAM: succinic semialdehyde dehydrogenase; KEGG: mes:Meso_1323 succinate semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; Belongs to the aldehyde dehydrogenase family. (480 aa)
Snov_3456KEGG: azc:AZC_4664 3-hydroxybutyryl-CoA dehydrogenase; PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein. (293 aa)
Snov_3495PFAM: iron-containing alcohol dehydrogenase; KEGG: reu:Reut_C6426 iron-containing alcohol dehydrogenase. (374 aa)
Snov_3532PFAM: pyruvate carboxyltransferase; KEGG: acr:Acry_2695 pyruvate carboxyltransferase. (307 aa)
Snov_3617PFAM: Asp/Glu/hydantoin racemase; KEGG: pde:Pden_4618 Asp/Glu racemase. (256 aa)
Snov_3651PFAM: Aldehyde Dehydrogenase; KEGG: rpc:RPC_0104 succinate-semialdehyde dehydrogenase (NAD(P)+); Belongs to the aldehyde dehydrogenase family. (502 aa)
Snov_3725PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rru:Rru_A1264 short-chain dehydrogenase/reductase SDR. (266 aa)
Snov_3739Poly(3-hydroxyalkanoate) synthetase-like protein; KEGG: avn:Avin_46290 poly(3-hydroxybutyrate) synthase subunit. (419 aa)
Snov_3873KEGG: xau:Xaut_2136 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein. (406 aa)
Snov_4048KEGG: rpd:RPD_0126 polyhydroxyalkanoate depolymerase, intracellular; TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein. (450 aa)
Snov_4154PFAM: Asp/Glu/hydantoin racemase; KEGG: mlo:mlr7137 arylmalonate decarboxylase. (261 aa)
Snov_4227PFAM: coenzyme A transferase; KEGG: oca:OCAR_7355 3-oxoadipate:succinyl-CoA transferase subunit B. (256 aa)
Snov_4228KEGG: oca:OCAR_7354 glutaconate CoA-transferase, subunit A; PFAM: coenzyme A transferase. (320 aa)
Snov_4329KEGG: vei:Veis_4520 succinate-semialdehyde dehydrogenase (NAD(P)(+)); PFAM: Aldehyde Dehydrogenase. (474 aa)
Snov_4334PFAM: Aldehyde Dehydrogenase; KEGG: rhi:NGR_c25860 putative NADP+ dependent succinate-semialdehyde dehydrogenase. (458 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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