STRINGSTRING
Snov_0800 Snov_0800 Snov_1986 Snov_1986 Snov_1987 Snov_1987 cheB cheB Snov_3064 Snov_3064 Snov_3556 Snov_3556 Snov_3671 Snov_3671
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Snov_0800PFAM: extracellular solute-binding protein family 5; KEGG: mno:Mnod_0490 extracellular solute-binding protein family 5. (532 aa)
Snov_1986CheW protein; KEGG: mxa:MXAN_6947 putative chemotaxis protein, CheW; PFAM: CheW domain protein; SMART: CheW domain protein. (163 aa)
Snov_1987PFAM: MCP methyltransferase CheR-type; Tetratricopeptide TPR_4; KEGG: pzu:PHZ_c0691 chemotaxis protein methyltransferase CheR; SMART: MCP methyltransferase CheR-type. (462 aa)
cheBResponse regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (365 aa)
Snov_3064PFAM: OmpA/MotB domain protein; KEGG: xau:Xaut_0846 OmpA/MotB domain-containing protein. (344 aa)
Snov_3556KEGG: pde:Pden_4771 ABC ribose transporter, periplasmic solute-binding protein. (319 aa)
Snov_3671KEGG: mlo:mll7019 hypothetical protein. (345 aa)
Your Current Organism:
Starkeya novella
NCBI taxonomy Id: 639283
Other names: S. novella DSM 506, Starkeya novella DSM 506, Starkeya novella IAM 12100, Starkeya novella str. DSM 506, Starkeya novella strain DSM 506
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