STRINGSTRING
pyrD pyrD Srot_1578 Srot_1578 Srot_1607 Srot_1607 Srot_1609 Srot_1609 Srot_1610 Srot_1610 pyrE pyrE Srot_1612 Srot_1612 Srot_2158 Srot_2158 Srot_2298 Srot_2298 carB carB carA carA Srot_2314 Srot_2314 pyrC pyrC pyrB pyrB Srot_2913 Srot_2913
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
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from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
pyrDDihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (352 aa)
Srot_1578Dihydropyrimidinase; KEGG: bcv:Bcav_2578 dihydropyrimidinase; TIGRFAM: dihydropyrimidinase; PFAM: amidohydrolase. (472 aa)
Srot_1607PFAM: Oxidoreductase FAD-binding domain protein; globin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: gbr:Gbro_4265 oxidoreductase FAD/NAD(P)- binding domain protein. (371 aa)
Srot_1609KEGG: mab:MAB_4264c hypothetical protein. (381 aa)
Srot_1610PFAM: short-chain dehydrogenase/reductase SDR; KEGG: rop:ROP_55910 putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (256 aa)
pyrEOrotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). (181 aa)
Srot_1612PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: sen:SACE_7187 tRNA/rRNA methyltransferase (SpoU). (221 aa)
Srot_2158KEGG: nml:Namu_0261 xanthine permease; TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; Oxo-4- hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase. (681 aa)
Srot_2298TIGRFAM: orotidine 5'-phosphate decarboxylase; KEGG: ami:Amir_5240 orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily. (291 aa)
carBKEGG: nfa:nfa36190 carbamoyl phosphate synthase large subunit; TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; Belongs to the CarB family. (1119 aa)
carATIGRFAM: carbamoyl-phosphate synthase, small subunit; KEGG: mav:MAV_3390 carbamoyl phosphate synthase small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; Belongs to the CarA family. (376 aa)
Srot_2314KEGG: nfa:nfa36210 hypothetical protein. (173 aa)
pyrCDihydroorotase, multifunctional complex type; Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily. (432 aa)
pyrBTIGRFAM: aspartate carbamoyltransferase; KEGG: rer:RER_30000 aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (324 aa)
Srot_2913TIGRFAM: amidase, hydantoinase/carbamoylase family; KEGG: aau:AAur_0749 putative N-carbamoyl-L-amino acid amidohydrolase; PFAM: peptidase M20. (415 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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