STRINGSTRING
Srot_0774 Srot_0774 Srot_0775 Srot_0775 Srot_0778 Srot_0778 Srot_2441 Srot_2441 Srot_2442 Srot_2442 Srot_2443 Srot_2443 Srot_2444 Srot_2444
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Srot_0774Oxygenase; KEGG: sma:SAV_5618 oxygenase. (344 aa)
Srot_0775PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: sma:SAV_5617 ornithine cyclodeaminase. (326 aa)
Srot_0778MATE efflux family protein; KEGG: nfa:nfa48650 putative transporter; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE. (450 aa)
Srot_2441Hypothetical protein; KEGG: sma:SAV_5618 oxygenase. (263 aa)
Srot_2442PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: nfa:nfa48620 hypothetical protein. (325 aa)
Srot_2443PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: nfa:nfa48630 hypothetical protein. (453 aa)
Srot_2444MATE efflux family protein; KEGG: nfa:nfa48650 putative transporter; TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE. (468 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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