STRINGSTRING
Srot_0300 Srot_0300 Srot_0378 Srot_0378 Srot_1338 Srot_1338 Srot_1576 Srot_1576 Srot_2161 Srot_2161 Srot_2520 Srot_2520 Srot_2521 Srot_2521 acpS acpS Srot_2540 Srot_2540 Srot_2736 Srot_2736 Srot_2738 Srot_2738 Srot_3011 Srot_3011
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Srot_0300PFAM: Beta-ketoacyl synthase; KEGG: mab:MAB_4608 3-oxoacyl-(acyl carrier protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (419 aa)
Srot_0378PFAM: phosphopantetheine-binding; KEGG: msm:MSMEG_2132 acyl carrier protein. (92 aa)
Srot_1338PFAM: phosphopantetheine-binding; KEGG: sen:SACE_0021 beta keto-acyl synthase. (93 aa)
Srot_1576PFAM: short-chain dehydrogenase/reductase SDR; KEGG: aau:AAur_2121 short chain dehydrogenase. (258 aa)
Srot_2161PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mva:Mvan_0259 3-ketoacyl-(acyl-carrier- protein) reductase. (457 aa)
Srot_2520PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gbr:Gbro_2407 3-oxoacyl-(acyl-carrier- protein) reductase. (241 aa)
Srot_2521KEGG: rop:ROP_70020 enoyl-[acyl-carrier-protein] reductase. (263 aa)
acpSHolo-acyl-carrier-protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. (137 aa)
Srot_2540PFAM: MaoC domain protein dehydratase; domain of unknown function DUF1729; Acyl transferase; Beta-ketoacyl synthase; KEGG: rha:RHA1_ro01426 fatty-acyl-CoA synthase. (3073 aa)
Srot_2736PFAM: Acyl transferase; KEGG: rha:RHA1_ro01199 [acyl-carrier protein] S- malonyltransferase. (303 aa)
Srot_2738PFAM: Beta-ketoacyl synthase; KEGG: nfa:nfa16170 3-oxoacyl-(acyl carrier protein) synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (419 aa)
Srot_3011KEGG: mab:MAB_3574c 3-oxoacyl-[acyl-carrier- protein] synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III. (340 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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