STRINGSTRING
Srot_2042 Srot_2042 Srot_2043 Srot_2043 Srot_2044 Srot_2044 Srot_2045 Srot_2045 Srot_2046 Srot_2046 Srot_2047 Srot_2047 Srot_2048 Srot_2048 Srot_2049 Srot_2049 Srot_2050 Srot_2050 Srot_2051 Srot_2051 Srot_2719 Srot_2719
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Srot_2042PFAM: Polyketide cyclase/dehydrase; KEGG: mab:MAB_4041c hypothetical protein. (209 aa)
Srot_2043KEGG: mab:MAB_4036 hypothetical protein. (269 aa)
Srot_2044PFAM: Mammalian cell entry related domain protein; KEGG: mab:MAB_4035 putative Mce family protein. (316 aa)
Srot_2045PFAM: Mammalian cell entry related domain protein; KEGG: mab:MAB_4034 putative Mce family protein. (348 aa)
Srot_2046PFAM: Mammalian cell entry related domain protein; KEGG: mab:MAB_4033 putative Mce family protein. (375 aa)
Srot_2047PFAM: Mammalian cell entry related domain protein; KEGG: nfa:nfa11170 putative Mce family protein. (347 aa)
Srot_2048PFAM: Mammalian cell entry related domain protein; KEGG: nfa:nfa11160 putative Mce family protein. (363 aa)
Srot_2049PFAM: Mammalian cell entry related domain protein; KEGG: mab:MAB_4030 putative Mce family protein. (422 aa)
Srot_2050PFAM: protein of unknown function DUF140; KEGG: mab:MAB_4029 putative YrbE family protein. (290 aa)
Srot_2051PFAM: protein of unknown function DUF140; KEGG: mab:MAB_4028 putative YrbE family protein. (280 aa)
Srot_2719KEGG: rop:ROP_16520 putative ABC transporter ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase. (352 aa)
Your Current Organism:
Segniliparus rotundus
NCBI taxonomy Id: 640132
Other names: S. rotundus DSM 44985, Segniliparus rotundus ATCC BAA-972, Segniliparus rotundus CIP 108378, Segniliparus rotundus DSM 44985, Segniliparus rotundus JCM 13578, Segniliparus rotundus str. DSM 44985, Segniliparus rotundus strain DSM 44985
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